Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00177 ATGTCATTCAAGAGTATTGTGAGAGAGCTCAAGGAGATGAAAGAGGGAATTAGCAACATGTATAGAAGAAGTGTAGAAACCAAGCATATGCATAGACATGGAAAATCTCACATAGCACCTGAATGTTCTTCACCTATATCACTATCACCATCAGCACCACCAACAACAGAATCATCATCACATGGCCAATGGGCTAATTTACCTCCTGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCTCGTGGCCATCTCGTCGAGCACTTGTAGCTTGTGCCTCAGTTTGTAGATTGTGGAGAGAGATAACAAAGGGTGTTGTTAAGACACTTGAACAGTGTGGGGTGCTCACTTTCCCTATATCACTGAAACAGCCTGGTCCAAGAGACAATCCGATTCAGTGTTTTATTAAGAGAGAAAGGGTTACTTCCACATATAGTTTATATCTTGGTTTGAGCCCTGCTCTATCTGGTGATATGAGCAAACTGCTCTTAGCAGCAAAGAAGATTAGAAGAGCAACATGTACAGAATTTGTAATATCATTGGTTGCTGATGATTTCTCTAAAACTAACAATACTTACATTGGAAAGCTAAGGTCTAATTTTCTCGGCACCAAGTTCATGATCTTCGACGGTCATCCTCCACACTATTCTTCACTTCCATTGAGTTCTAAGTTGCAGCAAAGGATCCATCATAAGAAGGTACTTCCAAAGGCTGCTCCTGCTACCGCTAACTATAAAGTAGCAACGGTATCTTATCAACTCAATGTTCTTCGTACAAGAGGTCCGAGGCGAATGCAGAGTACAATGCACTTAATTCCTATATCCTCAGTCAAAGAAGGAGGAACTGCTCCTACTCCTTTGGAATTTACCAATTACCATAATGAGGATGAATCTTCAAAAGTAAAAAACCCAGAAGTTGTTGAGTTTGGCTCAACTTGCACCGATTTTGCAAGAGAACCACTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCGGTGAAGAATTTTCAGCTTGTAGCAGCTGCAGAACCTTGTCAAAACGTACCGGCTGCAGAACAAGAGAAAGTTATACTACAATTTGGAAAAATTGGGAAGGACATATTCACTATGGATTATCGATATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACAAAACCAGCTTGTGAATGA 1251 0.4077 MSFKSIVRELKEMKEGISNMYRRSVETKHMHRHGKSHIAPECSSPISLSPSAPPTTESSSHGQWANLPPELLLDIIQRVEASETSWPSRRALVACASVCRLWREITKGVVKTLEQCGVLTFPISLKQPGPRDNPIQCFIKRERVTSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFVISLVADDFSKTNNTYIGKLRSNFLGTKFMIFDGHPPHYSSLPLSSKLQQRIHHKKVLPKAAPATANYKVATVSYQLNVLRTRGPRRMQSTMHLIPISSVKEGGTAPTPLEFTNYHNEDESSKVKNPEVVEFGSTCTDFAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00177 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Trre2g00177 416 CDD F-box_AtTLP-like 64 107 - -
Trre2g00177 416 MobiDBLite consensus disorder prediction 42 63 - -
Trre2g00177 416 SUPERFAMILY Tubby C-terminal domain-like 114 416 IPR025659 -
Trre2g00177 416 Gene3D - 57 109 - -
Trre2g00177 416 SUPERFAMILY F-box domain 49 106 IPR036047 GO:0005515
Trre2g00177 416 PANTHER TUBBY-RELATED 56 414 - -
Trre2g00177 416 Gene3D Tubby Protein; Chain A 121 416 IPR025659 -
Trre2g00177 416 MobiDBLite consensus disorder prediction 29 63 - -
Trre2g00177 416 Pfam Tub family 125 411 IPR000007 -
Trre2g00177 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Trre2g00177 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Trre2g00177 416 PRINTS Tubby superfamily signature 196 220 IPR000007 -
Trre2g00177 416 PRINTS Tubby superfamily signature 247 274 IPR000007 -
Trre2g00177 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Trre2g00177 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Trre2g00177 416 PRINTS Tubby superfamily signature 180 196 IPR000007 -
Trre2g00177 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Trre2g00177 416 Pfam F-box domain 64 110 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00177 Trre-Chr2 1550087 1551664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00177 13 416 TUB Transcription Factor Family AT1G47270 60.000 9.11e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre2g00177 Tub 2.9e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00177 K19600 - gmx:100796250 671.003