Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g00176 | ATGGCGAAAGAGGAAGTGAAATCAGTTGTTCCTGAATCCGTTTTGAAGAAGCAGAAAAGGAACGAAGAATGGGCTTTGGTGAAAAAGCAAGAACATGAAACAGCTAAGAAGAAGAGATCTGAAACTAGGAAACTCATTTGGAGTAGAGCCAAACAGTACGCTAAGGAGTATGATGAACAGCAAAAGGAGCTGATTAGGTTGAAGCGTGAAGCTAAACTTAAGGGTGGATTTTATGTTGATCCTGAAGCTAAGCTTTTGTTCATTGTTAGGATCAGAGGTATCAATGCTATGGACCCAAAATCAAGGAAGATTTTGCAGCTTTTGCGTTTGAGACAGATCTTTAATGGTGTCTTTCTCAAAGTCAACAAAGCCACTGTGAATATGCTCCACAGGGTAGAGCCATATGTTACATACGGGTACCCTAATCTGAAGAGTGTCAAGGAATTGATCTACAAGAGGGGTTACGGCAAAGTTGACCGACAGAGAATTGCTTTGACAGACAACTCTATCATCGAACAGGTTCTCGGGAAGCACGGGATCATTTGCATTGAAGATCTGATTCATGAGATACTGACAGTCGGCCCTCACTTCAGAGAGGCAAATAACTTCCTGTGGCCGTTCAAGCTCAAAGCTCCCCTAGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGTGGTGATGCTGGAAACAGGGAAGATAAGATCAATGAACTCATTAGAAGGATGAATTAG | 735 | 0.4177 | MAKEEVKSVVPESVLKKQKRNEEWALVKKQEHETAKKKRSETRKLIWSRAKQYAKEYDEQQKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDKINELIRRMN | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g00176 | 244 | NCBIfam | 60S ribosomal protein uL30 | 11 | 244 | IPR005998 | GO:0000463|GO:0003735|GO:0022625 | |
Trre2g00176 | 244 | Pfam | Ribosomal L30 N-terminal domain | 10 | 81 | IPR012988 | - | |
Trre2g00176 | 244 | Gene3D | - | 85 | 190 | IPR036919 | - | |
Trre2g00176 | 244 | Gene3D | - | 191 | 244 | IPR036919 | - | |
Trre2g00176 | 244 | SUPERFAMILY | Ribosomal protein L30p/L7e | 85 | 244 | IPR036919 | - | |
Trre2g00176 | 244 | CDD | Ribosomal_L7_archeal_euk | 85 | 244 | IPR035808 | - | |
Trre2g00176 | 244 | FunFam | 60S ribosomal protein L7 | 85 | 189 | - | - | |
Trre2g00176 | 244 | Coils | Coil | 50 | 74 | - | - | |
Trre2g00176 | 244 | ProSitePatterns | Ribosomal protein L30 signature. | 104 | 136 | IPR018038 | - | |
Trre2g00176 | 244 | PANTHER | 60S RIBOSOMAL PROTEIN L7 | 8 | 244 | IPR039699 | - | |
Trre2g00176 | 244 | FunFam | 60S ribosomal protein L7 | 190 | 244 | - | - | |
Trre2g00176 | 244 | Pfam | Ribosomal protein L30p/L7e | 86 | 136 | IPR016082 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g00176 | Trre-Chr2 | 1526927 | 1529251 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g00176 | 1 | 244 | Cytoplasmic Ribosomal Protein Gene Family | AT3G13580 | 81.967 | 2.50e-152 | 422 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g00176 | K02937 | - | gmx:100306213 | 421.779 |