Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00161 ATGGCCACATCTAGTGGAAACTCTAGTGTGTTAACAAAATCTCAAAGCTATGGATCTGAGGAAGATTTGCAAGTTCTTATGGATCAAAGAAAGAGGAAGAGAAAACAATCGAATCGCGAATCGGCAAGAAGATCAAGGATGAGGAAGCAGAAACACATGGATGATTTAATGGTTGAGGTGGAAAGACTAAGAAATGAAAACAATGAAATCATGACAAGGATGAACATGACATCACAACACTGCCTAAAAATTGAGGCAGAGAATTGTGTTTTAAGGGCACAAATGATTGAACTTAATCAAAGATAA 306 0.3693 MATSSGNSSVLTKSQSYGSEEDLQVLMDQRKRKRKQSNRESARRSRMRKQKHMDDLMVEVERLRNENNEIMTRMNMTSQHCLKIEAENCVLRAQMIELNQR 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00161 101 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Trre2g00161 101 Coils Coil 46 73 - -
Trre2g00161 101 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 75 IPR004827 GO:0003700|GO:0006355
Trre2g00161 101 MobiDBLite consensus disorder prediction 1 22 - -
Trre2g00161 101 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Trre2g00161 101 Pfam bZIP transcription factor 30 87 IPR004827 GO:0003700|GO:0006355
Trre2g00161 101 SUPERFAMILY Leucine zipper domain 30 82 IPR046347 GO:0003700|GO:0006355
Trre2g00161 101 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Trre2g00161 101 PANTHER BZIP TRANSCRIPTION FACTOR 44 13 101 - -
Trre2g00161 101 MobiDBLite consensus disorder prediction 1 55 - -
Trre2g00161 101 FunFam BZIP transcription factor 28 79 - -
Trre2g00161 101 Gene3D - 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00161 Trre-Chr2 1388749 1389152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00161 2 94 bZIP Transcription Factor Family AT1G75390 59.794 2.40e-30 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g00161 bZIP_1 1.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00161 K25786 - mof:131163078 139.428