Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00149 ATGTATCCAAACCAAGTGTTTTCTTCGGGATCTTACGCCGAGATGATTTCCGGGAATACTTTGTTACCTCATAACTACAGTGAATCTGTTGGAGGACAAAATGAGTTGAAGTTTATGACATCTATGAACGACACAATGAATATGCAGCATATCAATGAGGGTCATTCTAATGATACTACGAGCGATCCAAGGACACAATTTGGACTCGTCGAGAGCGAGCAAAATGTGCAATGTCAAGGCTTGTCTCTTAGCCTTGGTACAATGATGCCTTCCTTTCAGTATCAGTATCCCGGCAACAGTTTCACCTCGCTAATGAATGCTCAAATTTCAAACTTAAAGGAGTCTGCATCTTTTAAAGATGACGAGGAATTGAGAAATGCCGAGTGCATTGCATCTTTGTCTTCTGGAGGATTTCACAACACTGTCAAAAGGGAGGGTTTGTATAATCCACAACAGCACTCAATAGGCCTTAATGAAGGCCAATCTGATCCGTGCCTGCACGGATCAGCGGTTATTCCAAACAATTCCCTTAACTCACATTACCTTAAGGCAGCGCAGGAATTGCTTGATGAAATAGTTAATGTCCGAAAGGGGTTGAAACAAACTGGATCGGAAAAACAACAAAGTGTCCGTGACGCTGGTTTAGATGGTTCCAAAGATTCTGATGGAAAATCTACAAGCCAGTCTATGCAAATATCTCCGGGTCCTAATGGTTCTAATGCAAACAACCCTTCATGTGAGCTATCACCTGCCGAACGACAGCATTTGTTGGACAAGAAAACAAAACTTTTGGCCATGTTGGATGAGGTAGACAAAAGATACCGACAATACTGTCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGTTGTGGAGCTGCTGAACCATACACTGCTCTTGCTTTGCGCACAATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGCGGCCAAATTCAAGTAACTCAAAGGAGCCTAGGAGAACAAGAGGGAATACCTCGTCTCCGCTACGTGGATCAACAGCTTAGACAACAAAAAGCCCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGGGGACTTCCCGAAAGCTCTGTTTCAATACTCCGTGCATGGCTCTTCGAGCATTTTCTTCATCCTTATCCGAAGGATTCAGAGAAAATTATGTTGGCAAGACAAACTGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAACCAATGGTCGAAGAAATGTACAAAGAAGAGTTTGGTGATTCGGAGACAAGCAGCAATCTTTTATCAGAAAACACACTGAAAGCTCCGAGAGATGATGATGTTCGAGTGTGGGATGATAAAAGGGAAGAATCACAGGACAAGTTAACACCTATTGATAGTGTTCAACAAGGTCAAATTGCAGGATTGAAGTTGGATCATGCATCCTCCTCCACATCTGCCGCGACAGAATTGGATAGAGGGATTCAAAGTAATGATCATTGGACAAATATGATGGATTCTAGAATTGGGAAAATGCAGGGTGACCAACAAAGGTTTAACATGAACAATAGTCCTTATTCAAATGCACCTATCTCAATCAACCAAAATGGTGATGGTTGCATAATGGATTCTACTCCGACTACTTATGATGATTTATCAGAGTTGAGTAACTTTGGTGTTGGTGGCCATGTCTCACTTGCATTAGAGTTGAGGAACTCTGAAAGTGATGGTTTTGGTTTGTCGAATGATGACATCAATAAAAGGCGCAACCAAACATTGGCTTCTTCGTCAGATACCGATTTGTTAGATTATCATTTCACAGAAAATGGAAAGCAACAGCACAAGTTTGGCAACCCTCATTTATTACATGAGTTTGTTGTCTGA 1905 0.4215 MYPNQVFSSGSYAEMISGNTLLPHNYSESVGGQNELKFMTSMNDTMNMQHINEGHSNDTTSDPRTQFGLVESEQNVQCQGLSLSLGTMMPSFQYQYPGNSFTSLMNAQISNLKESASFKDDEELRNAECIASLSSGGFHNTVKREGLYNPQQHSIGLNEGQSDPCLHGSAVIPNNSLNSHYLKAAQELLDEIVNVRKGLKQTGSEKQQSVRDAGLDGSKDSDGKSTSQSMQISPGPNGSNANNPSCELSPAERQHLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENTLKAPRDDDVRVWDDKREESQDKLTPIDSVQQGQIAGLKLDHASSSTSAATELDRGIQSNDHWTNMMDSRIGKMQGDQQRFNMNNSPYSNAPISINQNGDGCIMDSTPTTYDDLSELSNFGVGGHVSLALELRNSESDGFGLSNDDINKRRNQTLASSSDTDLLDYHFTENGKQQHKFGNPHLLHEFVV 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00149 634 CDD homeodomain 362 423 IPR001356 GO:0003677
Trre2g00149 634 SMART prehox3 166 321 IPR006563 -
Trre2g00149 634 SMART HOX_1 362 426 IPR001356 GO:0003677
Trre2g00149 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 112 443 - -
Trre2g00149 634 MobiDBLite consensus disorder prediction 200 248 - -
Trre2g00149 634 Coils Coil 182 202 - -
Trre2g00149 634 Pfam Associated with HOX 178 320 IPR006563 -
Trre2g00149 634 ProSiteProfiles 'Homeobox' domain profile. 359 422 IPR001356 GO:0003677
Trre2g00149 634 Gene3D - 359 437 - -
Trre2g00149 634 SUPERFAMILY Homeodomain-like 363 429 IPR009057 -
Trre2g00149 634 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
Trre2g00149 634 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00149 Trre-Chr2 1308194 1310771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00149 178 446 Homeobox Transcription Factor Family AT2G16400 63.571 3.74e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre2g00149 POX 1.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00149 - - gmx:100775682 868.996