Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00145 ATGATGAAATCAGGTATGGGAATTGAAGAGAGAAAACAACTTAAAAGACCAGCACAAGCAAGTTCAAGAAAAGGGTGTATGAGAGGTAAAGGTGGACCTGAAAATGCAAGTTGCACCTACAAAGGTGTGAGACAGAGAACATGGGGCAAATGGGTTGCTGAAATTCGTGAACCAAACCGTGGTGCACGTCTTTGGTTAGGTACTTTTGAAACTTCTCATGAAGCTGCTTTAGCTTATGATGCTGCTGCTCGTAAACTTTATGGTCCTGATGCAAAACTCAACCTTCCTGAACTTTCTACACCATCTGTTCATTCCCCTGCAAATTCCTCATCCTCTGGGACAATAACACAAACACCTCATATGCAACAGCCTCAAATTCAAATTCAACACAACCCCAACAACAACAACTTCAACATTTCATCTCACAATTCTTGCAACAACAATATCAATATAAACATAAACAACAACATTCACAACAACAATAACAACAACAACTCTGTTTTTGTGTCACTGTCATCACAACAAATTGGTGATATTGCACCAATATATAGCAGTGATTCAATTATGTCACTTCCAATGGAAGAACAAGTTGAACAAAGCTATAATAATTTTTCAAATGGTATTGTGGAAAGTAATAATCATGATTCATTTTTTGGAACATTGAATTATGAAACCATGCCAGTTATAGATGATGATTCAATTTGGACAGAAGCTGCTATGTCTTTAGATTCTGCTATTTCAATGGATTTTCCAATGATAGTTGATGCTGATGGAATTTATAATTCAGGTGGAAATTTTGCTGAAGTTGGTGCTTGGGATTCTCTACAAACTCCATGGTGCATGTAA 846 0.3688 MMKSGMGIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGPDAKLNLPELSTPSVHSPANSSSSGTITQTPHMQQPQIQIQHNPNNNNFNISSHNSCNNNINININNNIHNNNNNNNSVFVSLSSQQIGDIAPIYSSDSIMSLPMEEQVEQSYNNFSNGIVESNNHDSFFGTLNYETMPVIDDDSIWTEAAMSLDSAISMDFPMIVDADGIYNSGGNFAEVGAWDSLQTPWCM 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00145 281 MobiDBLite consensus disorder prediction 1 17 - -
Trre2g00145 281 MobiDBLite consensus disorder prediction 99 135 - -
Trre2g00145 281 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Trre2g00145 281 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Trre2g00145 281 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Trre2g00145 281 MobiDBLite consensus disorder prediction 1 38 - -
Trre2g00145 281 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Trre2g00145 281 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 232 - -
Trre2g00145 281 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Trre2g00145 281 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Trre2g00145 281 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Trre2g00145 281 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Trre2g00145 281 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00145 Trre-Chr2 1267375 1268220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00145 15 119 AP2-EREBP Transcription Factor Family AT1G75490 76.190 3.55e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g00145 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00145 - - tpra:123886830 379.793