Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00141 ATGGCAGGTTTCTTCTCTCTAAGCAGTGGAAGAGGAAAAGAAGAAGCAAGAGAACAAGAAGAAAATAACAACAACAACAACACTGCAAATAACAATAATCAGTTTCTTTTTAGAAACGAAGAGATCTACAACAAAGGCTTTGAGATATGGCCACAACAACAACATCAACAATCTTCTTTTCATCATCAACAACAGCATCAACAAAACATTAACAATTTCTACTCGTTTGGTGTTGGTAGTTCATCTCGAAGAAACGACGACACAACCAACAACTTACATGATGATGTTTCCGTTTCTTTTTCCGATGAATCGACGAGATTTGGATTAACTGTGATAAGGTCTGGTGGCGGCGGTGCTGGTAGTTTAACCGGTGGAGGAATGAACTGTCAAGATTGCGGTAACCAGGCGAAGAAAGATTGTCCTCATCTTAGATGCAGAACTTGTTGTAAGAGTAGAGGGTTTCAGTGTCAAACTCATGTTAAAAGTACTTGGGTTCCTGCTGCTAAACGACGTGAGCGACAACAGCAGCTCACGTCGTTGCAGCAGCAGAACCAACAACATCAGTTTCACTCGTCAAGAAGACACAGAGAGAATCAAAATGATCCTTCTGCGGGAGGAGCTTCTGGTTCTCTTGCTTGTAGTCCAATACCTATCACTTCAACAGGGTTGGAGCTGGGAAGTTTTCCACCGGAGCTGAATTCTCCGGCGGTGTTCCGATGTGTTAAAGTGAGTGCAATGGATGCACAAGACGAGCGTTACGCGTATCAAACTGCTGTGAACATAGGAGGAAGAGTTTTCAAAGGAATTTTGTATGATCAAGGACTTGAAGGTAATTACACTAGTGCAAATGCTGTTGGTGGTGGTGGTGGTGGTGAGGGTTCTTCTGGTGGTGGTGGCAGCGGCGGTGGTGAAGGAAATCTACAAAATCTGATTACAACAACCACAACAAATGTTAGTAATCCTTTTGAGTATTCATCACTCTATCCAGCTCCATTGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1044 0.431 MAGFFSLSSGRGKEEAREQEENNNNNNTANNNNQFLFRNEEIYNKGFEIWPQQQHQQSSFHHQQQHQQNINNFYSFGVGSSSRRNDDTTNNLHDDVSVSFSDESTRFGLTVIRSGGGGAGSLTGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQHQFHSSRRHRENQNDPSAGGASGSLACSPIPITSTGLELGSFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLEGNYTSANAVGGGGGGEGSSGGGGSGGGEGNLQNLITTTTTNVSNPFEYSSLYPAPLNAFMAGTQFFPPPRS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00141 347 MobiDBLite consensus disorder prediction 170 211 - -
Trre2g00141 347 MobiDBLite consensus disorder prediction 288 309 - -
Trre2g00141 347 NCBIfam putative zinc finger domain, LRP1 type 128 170 IPR006510 -
Trre2g00141 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 333 IPR007818 GO:0003700|GO:0006355
Trre2g00141 347 MobiDBLite consensus disorder prediction 172 188 - -
Trre2g00141 347 MobiDBLite consensus disorder prediction 1 34 - -
Trre2g00141 347 NCBIfam LRP1 C-terminal domain 228 275 IPR006511 -
Trre2g00141 347 Pfam Domain of unknown function (DUF702) 126 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00141 Trre-Chr2 1220538 1222040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00141 1 347 C2H2 Transcription Factor Family AT1G75520 45.745 2.04e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre2g00141 DUF702 1e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00141 - - psat:127097211 476.092