Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00139 ATGAAGATCCAATGTGATGTTTGTAGCAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCCTTTGCACTGACTGCGATCACCGTGTCCACCACGCCAACAAACTTGCTTCCAAACATAACCGTCTCTCTCTTCATAACCCTTCTCCTAAACAACATCCTCTCTGTGATATTTGTCAGGAGAGAAGAGCTTTTGTGTTGTGTAAGCAAGATAGAGCAATTCTATGCAAAGATTGTGATTCATCAATTCATTCTGTAAATGAACTTACTGAGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCAACTACAAACTCTTCTTCTTCATCAACATCAATAACACCTTCTTCAGCTGTTCCTATTTCCAAGTCAATTATTGTTCCTTCTTCTTCTACTTCTTCTTTGGTTGATAAATCTACTACTCCTTCACCAAAATCTATGGAAGATGGAAGTGGTGGTTCTACTATTTCTCAATACTTGATTGAGACTTTACCTGGTTGGCAAGTTGATGACTTTCTTGATTCTTCTTCTGCTCCCTTTGCTTTCTCTAAGGGTGATGAATTATTTGAAGAAAATCTTGATTCATTTTTTCCAAATAATAATTTGGGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATATTCTTCATCACAAATCATGATGGGGAACATTGAGACAACAAAGAAAGGGAACAACAACAAGAACAACATCAACATCAACAAATCAAAGTTAAGAGATGATGGGAATATTTTCACAGTTCCACAAATTAGTCCTGTTTACAATCCCAAGAGAACAAGATATCTATGGTAG 825 0.3782 MKIQCDVCSKNEASLFCTADEAALCTDCDHRVHHANKLASKHNRLSLHNPSPKQHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVNELTEKHDRFLLTGVKLSTTNSSSSSTSITPSSAVPISKSIIVPSSSTSSLVDKSTTPSPKSMEDGSGGSTISQYLIETLPGWQVDDFLDSSSAPFAFSKGDELFEENLDSFFPNNNLGIWVPQAPPPSLYSSSQIMMGNIETTKKGNNNKNNININKSKLRDDGNIFTVPQISPVYNPKRTRYLW 274
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00139 274 SMART bboxneu5 53 100 IPR000315 GO:0008270
Trre2g00139 274 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre2g00139 274 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Trre2g00139 274 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Trre2g00139 274 MobiDBLite consensus disorder prediction 136 156 - -
Trre2g00139 274 FunFam B-box zinc finger protein 21 1 98 - -
Trre2g00139 274 CDD Bbox1_BBX-like 5 47 - -
Trre2g00139 274 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre2g00139 274 CDD Bbox1_BBX-like 57 100 - -
Trre2g00139 274 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Trre2g00139 274 Gene3D Classic Zinc Finger 1 94 - -
Trre2g00139 274 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 263 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre2g00139 Trre-Chr2 1193703 1194966 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00139 1 274 C2C2-CO-like Transcription Factor Family AT1G75540 44.118 3.84e-74 228
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre2g00139 zf-B_box 1.3e-05 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00139 - - lja:Lj5g3v0165540.1 290.426