Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00108 ATGGAAGGTTTTGATCAAAGTGGTAATAATAAAAAAAATATTCAAGCATTTAGTTCTTCTTTAGGTGCATCTGCCAAACCCCCAATTAGGTTGAATTCTATGCCTATTAATCAATTTAATCAAATGGGTTTTCCTGAAAATCAAAAAAGTTCTGGTCTTGGTATACCACCTTCATACCCTAATACCAATACTAGTTTATCACCTAAACCTTCATCTCATTATCCCCAATTTATTGGCTCACAATCCCAAAGTCATTCTAGGTCTTTGTCTCAGCCTACTTTTTTCAATCTTGATTCATTTTCCTTGCCTCCACTGAGTCCTTCAGTTTACCCTCCTGTGAGTTCCAACCCTTTTTCTGATTCGGGGTCGAAAGATATTTCTATGGAGGAAAACTTTGGTGTCTCTCAAGCACCTTCGCCTAACCGTGGTCATGCTGTTCAACATGGTCTTTGTCTTCCACCTCGTAAAGGGCACAGACGATCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTCCCTCAGTCGGTGGGTGATTGTCGGAATTTGGTTTCTGGAGGAGAGAAATTGGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACAGTGTTGATGGGTTTAGGGGAGAGGTTTTTGATGGGAAGAAAGAGGATGATGCAACTGTGATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGAATAATATGAGTTTTTCCGGTATGGAAGATAGCAGAACTAGTGGTTCGAAGACTGTTGAAAGCAGTGATAACGAAGCTGAGAGTCATGTAAATGTAAAAGGAGTAGGTGCTAAGGGTGCAAGTTCAAGCGGGTCGGAAGAGAGGAGGGAAGGAGTCAAGAGAAATTCTAATGGAGATATTGCGCCGGGTAGTCGGCATAGGAGAAGTTTCTCATTGGACAGTTCCATTGGAAATTTTCATTTTGAAGATGGATCGCCTAAGCTTCCTCCTTTACAAAGTCGAGCTGGTCAACACTCGCCAAGCAATTCAATGGATGGTTGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATCAAGAAAATAATGGAAAATGACAAGCTTGCTGAAATTGCTGCGTCTGATCCCAAGCGCGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGATACATTTCTGAATTGGAGCACAAGGTCCAAACTCTTCAGACTGAGACTACTACATTGTCTACTCAGTTTACCAAATTACAGATGGATAACTCAGAGCTTAAAAATGAGAATAACGAGTACAAATTGAGGCTTCAATCCATGGAACAGCAGTCTCAACTGAAAGATGCTCTGAATGAAACTTTGGATGCTGAAGTCCGGCGCTTAAGACGCACTGTAGCAGAACTAGGTGGAGAATCCCTCCTGTCGAGTCTCATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGTCACAGCATCAGCAACCAAACCAGCTTAGAAATTTCCAACCACAGAACAGCCAATCTCAGGAAGAAACACAGACTCAGTCTCAGCAGCATATTCAACGCAATCATGAATTCCAATCCAAGCATCAGAATGGCAAAACTACTGCATAG 1656 0.4215 MEGFDQSGNNKKNIQAFSSSLGASAKPPIRLNSMPINQFNQMGFPENQKSSGLGIPPSYPNTNTSLSPKPSSHYPQFIGSQSQSHSRSLSQPTFFNLDSFSLPPLSPSVYPPVSSNPFSDSGSKDISMEENFGVSQAPSPNRGHAVQHGLCLPPRKGHRRSSSDSPLGISEFVNSVPQSVGDCRNLVSGGEKLGYEKPIQLVLKDRDSVDGFRGEVFDGKKEDDATVMDDLFSAYMNLENMNNMSFSGMEDSRTSGSKTVESSDNEAESHVNVKGVGAKGASSSGSEERREGVKRNSNGDIAPGSRHRRSFSLDSSIGNFHFEDGSPKLPPLQSRAGQHSPSNSMDGCKTPEISMEFGNGEFSSQEIKKIMENDKLAEIAASDPKRAKRILANRLSAARSKERKMRYISELEHKVQTLQTETTTLSTQFTKLQMDNSELKNENNEYKLRLQSMEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSLMARQLAINQQMFQSQHQQPNQLRNFQPQNSQSQEETQTQSQQHIQRNHEFQSKHQNGKTTA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00108 551 MobiDBLite consensus disorder prediction 246 262 - -
Trre2g00108 551 FunFam Transcription factor VIP1 isoform A 383 445 - -
Trre2g00108 551 Pfam bZIP transcription factor 385 443 IPR004827 GO:0003700|GO:0006355
Trre2g00108 551 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 72 537 - -
Trre2g00108 551 Coils Coil 429 456 - -
Trre2g00108 551 SMART brlzneu 381 445 IPR004827 GO:0003700|GO:0006355
Trre2g00108 551 MobiDBLite consensus disorder prediction 333 347 - -
Trre2g00108 551 MobiDBLite consensus disorder prediction 1 90 - -
Trre2g00108 551 MobiDBLite consensus disorder prediction 246 347 - -
Trre2g00108 551 SUPERFAMILY Leucine zipper domain 385 441 IPR046347 GO:0003700|GO:0006355
Trre2g00108 551 CDD bZIP_plant_RF2 386 458 IPR044759 GO:0003700|GO:0006355
Trre2g00108 551 Coils Coil 401 421 - -
Trre2g00108 551 MobiDBLite consensus disorder prediction 137 167 - -
Trre2g00108 551 Coils Coil 464 484 - -
Trre2g00108 551 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 383 446 IPR004827 GO:0003700|GO:0006355
Trre2g00108 551 MobiDBLite consensus disorder prediction 502 551 - -
Trre2g00108 551 Gene3D - 382 445 - -
Trre2g00108 551 MobiDBLite consensus disorder prediction 502 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00108 Trre-Chr2 854468 857796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00108 5 503 bZIP Transcription Factor Family AT4G38900 43.321 1.90e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g00108 bZIP_1 5.9e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00108 - - gmx:100810841 613.609