Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g00108 | ATGGAAGGTTTTGATCAAAGTGGTAATAATAAAAAAAATATTCAAGCATTTAGTTCTTCTTTAGGTGCATCTGCCAAACCCCCAATTAGGTTGAATTCTATGCCTATTAATCAATTTAATCAAATGGGTTTTCCTGAAAATCAAAAAAGTTCTGGTCTTGGTATACCACCTTCATACCCTAATACCAATACTAGTTTATCACCTAAACCTTCATCTCATTATCCCCAATTTATTGGCTCACAATCCCAAAGTCATTCTAGGTCTTTGTCTCAGCCTACTTTTTTCAATCTTGATTCATTTTCCTTGCCTCCACTGAGTCCTTCAGTTTACCCTCCTGTGAGTTCCAACCCTTTTTCTGATTCGGGGTCGAAAGATATTTCTATGGAGGAAAACTTTGGTGTCTCTCAAGCACCTTCGCCTAACCGTGGTCATGCTGTTCAACATGGTCTTTGTCTTCCACCTCGTAAAGGGCACAGACGATCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTCCCTCAGTCGGTGGGTGATTGTCGGAATTTGGTTTCTGGAGGAGAGAAATTGGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACAGTGTTGATGGGTTTAGGGGAGAGGTTTTTGATGGGAAGAAAGAGGATGATGCAACTGTGATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGAATAATATGAGTTTTTCCGGTATGGAAGATAGCAGAACTAGTGGTTCGAAGACTGTTGAAAGCAGTGATAACGAAGCTGAGAGTCATGTAAATGTAAAAGGAGTAGGTGCTAAGGGTGCAAGTTCAAGCGGGTCGGAAGAGAGGAGGGAAGGAGTCAAGAGAAATTCTAATGGAGATATTGCGCCGGGTAGTCGGCATAGGAGAAGTTTCTCATTGGACAGTTCCATTGGAAATTTTCATTTTGAAGATGGATCGCCTAAGCTTCCTCCTTTACAAAGTCGAGCTGGTCAACACTCGCCAAGCAATTCAATGGATGGTTGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATCAAGAAAATAATGGAAAATGACAAGCTTGCTGAAATTGCTGCGTCTGATCCCAAGCGCGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGATACATTTCTGAATTGGAGCACAAGGTCCAAACTCTTCAGACTGAGACTACTACATTGTCTACTCAGTTTACCAAATTACAGATGGATAACTCAGAGCTTAAAAATGAGAATAACGAGTACAAATTGAGGCTTCAATCCATGGAACAGCAGTCTCAACTGAAAGATGCTCTGAATGAAACTTTGGATGCTGAAGTCCGGCGCTTAAGACGCACTGTAGCAGAACTAGGTGGAGAATCCCTCCTGTCGAGTCTCATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGTCACAGCATCAGCAACCAAACCAGCTTAGAAATTTCCAACCACAGAACAGCCAATCTCAGGAAGAAACACAGACTCAGTCTCAGCAGCATATTCAACGCAATCATGAATTCCAATCCAAGCATCAGAATGGCAAAACTACTGCATAG | 1656 | 0.4215 | MEGFDQSGNNKKNIQAFSSSLGASAKPPIRLNSMPINQFNQMGFPENQKSSGLGIPPSYPNTNTSLSPKPSSHYPQFIGSQSQSHSRSLSQPTFFNLDSFSLPPLSPSVYPPVSSNPFSDSGSKDISMEENFGVSQAPSPNRGHAVQHGLCLPPRKGHRRSSSDSPLGISEFVNSVPQSVGDCRNLVSGGEKLGYEKPIQLVLKDRDSVDGFRGEVFDGKKEDDATVMDDLFSAYMNLENMNNMSFSGMEDSRTSGSKTVESSDNEAESHVNVKGVGAKGASSSGSEERREGVKRNSNGDIAPGSRHRRSFSLDSSIGNFHFEDGSPKLPPLQSRAGQHSPSNSMDGCKTPEISMEFGNGEFSSQEIKKIMENDKLAEIAASDPKRAKRILANRLSAARSKERKMRYISELEHKVQTLQTETTTLSTQFTKLQMDNSELKNENNEYKLRLQSMEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSLMARQLAINQQMFQSQHQQPNQLRNFQPQNSQSQEETQTQSQQHIQRNHEFQSKHQNGKTTA | 551 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g00108 | 551 | MobiDBLite | consensus disorder prediction | 246 | 262 | - | - | |
Trre2g00108 | 551 | FunFam | Transcription factor VIP1 isoform A | 383 | 445 | - | - | |
Trre2g00108 | 551 | Pfam | bZIP transcription factor | 385 | 443 | IPR004827 | GO:0003700|GO:0006355 | |
Trre2g00108 | 551 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 72 | 537 | - | - | |
Trre2g00108 | 551 | Coils | Coil | 429 | 456 | - | - | |
Trre2g00108 | 551 | SMART | brlzneu | 381 | 445 | IPR004827 | GO:0003700|GO:0006355 | |
Trre2g00108 | 551 | MobiDBLite | consensus disorder prediction | 333 | 347 | - | - | |
Trre2g00108 | 551 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
Trre2g00108 | 551 | MobiDBLite | consensus disorder prediction | 246 | 347 | - | - | |
Trre2g00108 | 551 | SUPERFAMILY | Leucine zipper domain | 385 | 441 | IPR046347 | GO:0003700|GO:0006355 | |
Trre2g00108 | 551 | CDD | bZIP_plant_RF2 | 386 | 458 | IPR044759 | GO:0003700|GO:0006355 | |
Trre2g00108 | 551 | Coils | Coil | 401 | 421 | - | - | |
Trre2g00108 | 551 | MobiDBLite | consensus disorder prediction | 137 | 167 | - | - | |
Trre2g00108 | 551 | Coils | Coil | 464 | 484 | - | - | |
Trre2g00108 | 551 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 383 | 446 | IPR004827 | GO:0003700|GO:0006355 | |
Trre2g00108 | 551 | MobiDBLite | consensus disorder prediction | 502 | 551 | - | - | |
Trre2g00108 | 551 | Gene3D | - | 382 | 445 | - | - | |
Trre2g00108 | 551 | MobiDBLite | consensus disorder prediction | 502 | 536 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g00108 | Trre-Chr2 | 854468 | 857796 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g00108 | 5 | 503 | bZIP Transcription Factor Family | AT4G38900 | 43.321 | 1.90e-98 | 307 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bZIP | Trre2g00108 | bZIP_1 | 5.9e-10 | CL0018 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g00108 | - | - | gmx:100810841 | 613.609 |