LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g00104	ATGGTGAAATCTAACCCTTGTTTAAGGTTAATCACTTGCGGTGGTGGTTCTTCTAACAAACAAGATCACCAAGTTGTTTCAGAGGTCAAGGATTCTAATGATAAACGTGGTTGGAGTTTTCGGAAGAGATCTGCAAGACATCGTGTGCTTAGCAATACTGTGGTAACAACAGAGACCACGTCTTCGGCAAATAAGGAGATTCCAGAATATACAAGTACTAATTTTCAATCTCCAGCTGAACCTAATGTCGTTGAAAAGATTTGTACGACAGATTTCTCTGATGAGAAACCTCAGTTATCCTCCAATGCATATTCGGAGGTGTCAGAAAAAATTGTCACTGAAGCTGAGGGTAAAGTGGACGTCAATCCACCAGAATCTGTGGTGATAATCGTCCAGACTGCCATTAGAGCATATTTGGCTCAGAGAGCACTTCTGAAGAGTAAACATGTAGTGAAGTTGCAGGCTGCTGTTCGAGGTCACTTGGTCAGAAGGCACGCTGTAGGAACATTGCGATGTGTTCAAGCTATTGTTAAAATGCAGCTACTTGTACGAGCACGACATGCTCAGAAGTCACAACCGGATGCCAAAAATGATTACTCAAAAACTTCGGATAACGAGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTCGTCAGCTTCTGGAATCAACACCGAAAGACAAACCTATCCATGTCAAATGTAATCCTTCTAAAGGCGATTCTGCTTGGAAATGGTTGGAGAGATGGATGCCGGTTCCAGCAAAAGATTCTGCTGAGAATAAAAAGCCAATCAGCGTGTCAGAACAGTCAGATGAAACCAAAGATAGAACTCATGTATCTCAATTGGAAACAGATACTCCATCTCATGTTATTCTTCAATTAGCTGATTCAGCTCTACCATCCGAGGATGAAGAGAAGACTTCTACTTATGATGATACTAACTCATACTTTCAAGCAAGCCCCTCTACATCTTCTCTTATAAAGGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTTCAATTGGTGCTAAAGTATCCTCCAATGAAAGTGAGTATTTTCAAACGGAGATTTTGGATTCAAATGCAAGTGTTCCACAGGAACCTAGTTCTCATCAAAATCCAGAAACTGACGGTGAACAGATCAATCATCCACATGGTGCTAAAATAGGCTCCAGTACAATTGATTCTGTTGAAAAGGAATTGTTCGGTTCAAATGCAAGTGTTGCACGGGAGCCTAGTTCGCCTCAGAATCCAGAAAGTGAGAGTGAACCGTTCAAACAACCAATAAAAGCATTTGCCTCAGACCAACTAGAGACTGAGGGAAAGAAAGTTGCAGGTGTATCAAGGAAGTTAAGCAATCCAGCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATGTGAATTCGGGTAGGCCAAGTTCTTTGTTCGATCAGGATGTATCAGTTGAATCACAAGCAGATACTGCATATATATCAAAAGAGTTCATCTCATCTGAGAATTCTACTCCCTATCCTTCTAGAATTGGTGATCCTGAAACTGTACTCTCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAAGCGAGCACGATGCTAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAATATTGATTATGGTGTCGGAGCCAATACTCCAACTTCTAACCTACCTATCTCTGATTCTGATCGATTAGAAACTGTTAACGACTCCAGTGGAAATATTGTTGATTCAGTGATTCCCGAGAACTTCAAAGAGCCTGCTGTTGAACCTGATGTAAATGCGTCTGACCTGTTGAGAGAAAAAACTGAGACTGTTCAACCAGATTTCAAGTTGGCAGCTTCACCAGGAAGCTATATGACAATACCTGAGTCTCAAGGAACACCTTCAAGTCAGGTTTCAGTGAAACCTAATAAAATAAACAAGACTGGATCAAGTGGTAAACGTAGGGCACTGTCTATGGGTAACAAATCTCCTGCAAATTCAAATAACGATTCAGGCTCAAGAGTGTCTGTCGGTAACAAGTCTCCTGCGAATGCAAATCACGATTCAGGCTCAAGAGGCAGTAGAGAACAATTGCCTAAGGATCAGCTGAACGGAAAGAGACGCAATTCAATTGGCTCAATAAAACCTGATCACACTGATCAAGAACCTCCTAGAGATAATAGTAGTAACAACAGTTCTCTTCCCCGTTTCATGCAAGCTACACAATCTGCTAGGGCCAAGATCAATGCAAATTCCTCCCCAAGATCAAGTCCAGATGTACATGACCCTGACGTTAACATTAAGAAGAGACATTCCTTGCCTGGTGCAACTGGTAAGCAGGGTTCTCCACGTGTCGAACAATCAATATCTCCAGCTCAGCAAAGCACAAAGGGAAATGGTTCAACCGAGAGAAAATGGCAGAGGTAA	2451	0.4157	MVKSNPCLRLITCGGGSSNKQDHQVVSEVKDSNDKRGWSFRKRSARHRVLSNTVVTTETTSSANKEIPEYTSTNFQSPAEPNVVEKICTTDFSDEKPQLSSNAYSEVSEKIVTEAEGKVDVNPPESVVIIVQTAIRAYLAQRALLKSKHVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQLLVRARHAQKSQPDAKNDYSKTSDNEKHTSVEKLLSNKFARQLLESTPKDKPIHVKCNPSKGDSAWKWLERWMPVPAKDSAENKKPISVSEQSDETKDRTHVSQLETDTPSHVILQLADSALPSEDEEKTSTYDDTNSYFQASPSTSSLIKDNLEEAPPEKTVSIGAKVSSNESEYFQTEILDSNASVPQEPSSHQNPETDGEQINHPHGAKIGSSTIDSVEKELFGSNASVAREPSSPQNPESESEPFKQPIKAFASDQLETEGKKVAGVSRKLSNPAFIAAQSKFEELSSNVNSGRPSSLFDQDVSVESQADTAYISKEFISSENSTPYPSRIGDPETVLSISSTLDSPDRSETLESEHDAKDLVEGIVNPENNIDYGVGANTPTSNLPISDSDRLETVNDSSGNIVDSVIPENFKEPAVEPDVNASDLLREKTETVQPDFKLAASPGSYMTIPESQGTPSSQVSVKPNKINKTGSSGKRRALSMGNKSPANSNNDSGSRVSVGNKSPANANHDSGSRGSREQLPKDQLNGKRRNSIGSIKPDHTDQEPPRDNSSNNSSLPRFMQATQSARAKINANSSPRSSPDVHDPDVNIKKRHSLPGATGKQGSPRVEQSISPAQQSTKGNGSTERKWQR	816

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	411	427	-	-
	Trre2g00104	816	ProSiteProfiles	IQ motif profile.	146	175	IPR000048	GO:0005515
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	187	211	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	632	700	-	-
	Trre2g00104	816	Gene3D	-	124	171	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	558	591	-	-
	Trre2g00104	816	PANTHER	IQ-DOMAIN 5-RELATED	32	789	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	504	816	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	533	548	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	264	285	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	366	383	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	189	211	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	366	437	-	-
	Trre2g00104	816	Pfam	IQ calmodulin-binding motif	149	165	IPR000048	GO:0005515
	Trre2g00104	816	Pfam	Protein of unknown function (DUF4005)	727	791	IPR025064	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	504	532	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	789	816	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	257	324	-	-
	Trre2g00104	816	MobiDBLite	consensus disorder prediction	733	767	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g00104	Trre-Chr2	828211	832753	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g00104	421	816	IQD Protein Family	AT1G19870	34.272	1.99e-36	144

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g00104	-		-	cam:101492650	1042.72