Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00103 ATGGATGACAAGATAGACACTGCAGAAAAGAAGGTGCTGGTTGATATTGTAAAGTTGTCACAAAAGAAAGGCATGAAGGGTCAAATGGGAGACTGGAAAGAATTCTTGAACAGTCATGATAAAAAATTTGGGGCAGGTATGAGTGATCCATCAAAGAGGTCCCATGAGGTTTTGGCTGCATTTCTAAAGACATTCACAAAGGATGATGATTTGAAGTTTTTTGGTAATATCATGCGGCATCATTCAAATCAATACACGTTAGAGCGACTGAAAGATAGATCTCATGATTCCCCCGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCATCCTAGGTATCCACGGGATTATTCACTGCCATCTATTGATGAGGGATGGTTAGTGATAAATCTTAAAAAGAAAGGCAAGGGGATAAGATCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCGCTGTGAAGATGGGACTGAAGCTTTAGTCAAAGTCTGTGTTGTAGATCAAAATCTAGAGGTCAAGTTGCACAAACTTGTTAAACCGGAGAAAGCAATTGTAGACTATAAAACAGACATCACTGGTGTCTCTTCTGAAGATTTAAAGACAGTGACTTGTTCCTTAGCTGATATACAGAAATCAATGAAGAAGTTGTTATCCAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGTGTGCTGAAGCTAGATTACGTTAGAGTGATCGACACTGCATACATCTTCCAACCCTTGGATGGATCAATTCACATGAGACCTTCTTTGAATAGTTTATGTCAGTCTGTGTTGGGCTATGAAGTTCGGAAAAAGGGTGCTTCACATGATTGTCTAGATGATGCATGTGCAACAATGAAACTAGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTGGCAGTGGTTAAAGAGCCTGTTTCAGAAAGTGAGATGGCGAAGCTGTTTATTCACAGAATTCCAACCACTATGAACATTGAATCACTACATGAAATTGTTCCTGGAGACTTCACAATAGAGCGAAAGCCTTCCAGGAATGATCAAGGAGATAAATATTCCGCCTTTGTGATCTTTAAGAACCTACGAGAGGCACATGATGCATATGAAAGTCTCCAAGGTAGCCAATCAAAGGATTCAAATGGGCGTCTACAGAAAAATGTCACATGTCGGCTGAGTACGGGCATGAGTGTCAGTGTATTTGTTCGGGAAATGGGAATTGATGATCAGCACAAAAAAATGCCATATAAGAGAGATTTACCGGTGGACGAGACAATTGATGTTCCCAAGAACAAGAAAGTAAAAATGGATCCTGAAGTTGAAGATGCCTACTTGAAAGAGATAGAAGCATTGAATCAACGATTGAAAGAAAGTGTGTCGGAAATCGATTCATTGAAGGAACAGTTGAGAAAAGTGGATCCTGAAATTGTAAAAGATGCCCACTTGAAAGAGATTGAAGCATTGAATCAACGATTGAAAGAGAGTGAATTGGAGATTGAATCATTGAGGGAACAGACAAGAAAAAAGGACTTTGAAATCAACGCTCTGCATAAAATGGTATCAACCTTGCAAAAAAGGATAAAACCTAAAAAATAG 1614 0.3922 MDDKIDTAEKKVLVDIVKLSQKKGMKGQMGDWKEFLNSHDKKFGAGMSDPSKRSHEVLAAFLKTFTKDDDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQRLVQVTLQHPRYPRDYSLPSIDEGWLVINLKKKGKGIRSTAMVAVDCEMVRCEDGTEALVKVCVVDQNLEVKLHKLVKPEKAIVDYKTDITGVSSEDLKTVTCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKLDYVRVIDTAYIFQPLDGSIHMRPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLAVVKEPVSESEMAKLFIHRIPTTMNIESLHEIVPGDFTIERKPSRNDQGDKYSAFVIFKNLREAHDAYESLQGSQSKDSNGRLQKNVTCRLSTGMSVSVFVREMGIDDQHKKMPYKRDLPVDETIDVPKNKKVKMDPEVEDAYLKEIEALNQRLKESVSEIDSLKEQLRKVDPEIVKDAHLKEIEALNQRLKESELEIESLREQTRKKDFEINALHKMVSTLQKRIKPKK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00103 537 Pfam Exonuclease 143 292 IPR013520 -
Trre2g00103 537 CDD REX1_like 143 294 IPR034922 -
Trre2g00103 537 SMART exoiiiendus 141 302 IPR013520 -
Trre2g00103 537 Coils Coil 484 511 - -
Trre2g00103 537 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Trre2g00103 537 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 309 IPR047021 GO:0004527
Trre2g00103 537 Gene3D - 136 305 IPR036397 GO:0003676
Trre2g00103 537 FunFam Small RNA degrading nuclease 3 137 311 - -
Trre2g00103 537 CDD RRM_SF 322 382 - -
Trre2g00103 537 Coils Coil 447 474 - -
Trre2g00103 537 SUPERFAMILY RNA-binding domain, RBD 317 385 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00103 Trre-Chr2 820470 826165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00103 138 309 C2H2 Transcription Factor Family AT3G27970 32.984 1.03e-16 80.1