Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00100 ATGTCTGCCAAATGTAGTAAAATTCGCCACATTGTACGCCTCCGCCAGATGCTACGACGCTGGAGAAACAAAGCTCGCATATCCTCAGCTAATCGTGCACCGTCTGATGTACCATCTGGACACGTGGCAGTATGTGTTGGTGCTAACTACACCAGATTTGTAGTGCGCGCTACGCACCTAAACCACCCAATTTTCCAGAAGCTTCTTGTTCAAGCCGAAGAAGAGTATGGTTTCTCTAATCATGGACCTCTTACCATCCCTTGTGATGAAGATTTCTTTGAAGAAGCTCTCCGGTTCATTTCCCGGTCCGGTTCAAACAATGGACCTAACCGGTTCGTTAATCTCGAGGTTGAAGATATTCAAAAACGCTGCCACGTGGGAATTAGAAATAACGTGGATTTCTGGCCTGAATCTCGACCGCTCCTACATAGTCTTAGTGAAAAAACCATTTGGTAG 456 0.4605 MSAKCSKIRHIVRLRQMLRRWRNKARISSANRAPSDVPSGHVAVCVGANYTRFVVRATHLNHPIFQKLLVQAEEEYGFSNHGPLTIPCDEDFFEEALRFISRSGSNNGPNRFVNLEVEDIQKRCHVGIRNNVDFWPESRPLLHSLSEKTIW 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00100 151 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 97 IPR003676 GO:0009733
Trre2g00100 151 Pfam Auxin responsive protein 13 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00100 Trre-Chr2 769918 770373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00100 3 150 Calmodulin-binding Proteins AT4G34750 52.632 1.72e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00100 K14488 - qsu:112012848 242.662