Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00099 ATGAGTTCCTTAGAAGAAAAGGTTAAAGGTGTTGGAGTTGGAGGAGTTGGAGGTGGACTTGTTGCTGAGATGAAATTGCTTAAAGAAATGCAGGAACATTGTGGGGTAAGAAAGACTTTAAATTCAGAGTTATGGCATGCTTGTGCTGGCCCTCTTGTATCTTTGCCTCAAGTTGGAGGTCTTGCTTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAATAACAGCAACTTCACAGATTCCAAACTACCCTAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAATGTCACACTACATGCTGATAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCATTGAATTCTGAAAAAGAAGTGTTTCCTATATCTGAGTTTGGATTAAACAAAAGTAAACATCCAACCGAGTTTTTCTGCAAAACTTTGACTGCTAGTGATACTAGTACACATGGTGGTTTTTCAGTTCCACGCAGAGCTGCTGAGAAGCTGTTTCCTCCATTGGATTACACAATTCAACCCCCGACCCAAGAACTTGTTGTTCGCGATTTGCATGATAATACATGGACATTTCGGCATATATACCGAGGTCAGCCTAAGAGACACCTTCTTACAACCGGGTGGAGTTTGTTTGTAGGCTCAAAAAGGCTTCGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTCAGGCGTGGTAATCGTCAACAGACAACACTACCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCCGCTGCTAATCGAAGTCCATTCACCATTTTCTACAATCCAAGGGCATGTCCATCAGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGGAACACAGCTCTCGGTTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGCACAATTGTTGGTATCAGTGATGTCGATCCGTTAAGGTGGCCTGGTTCAAAGTGGCGAAATATTCAGACTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATCGAGTTAGTGTATGGGAGATTGAAACTCCTGAAAGCCTTTTTATCTTTCCTCCTTTGACCTCGAGTCTAAAACGACCATTTCAATCCGGATTTTCTGAAAATGATTGGGGGACTTTGTTAACAAGACCTTTTATTAAAGCACCTGAAAATGGAACAATGGATCTCTCAAACTCAATGCAAAATCTCTACCAAGAAAACATAATGAAGATGCTTTATAAACCACAAGTTATCAACAACAATGGAACCTTTTTACCTGTCATGCAACAGGAATATGTTCCTACACGAGGTCCATTGCAAGATATGAAGTCATCGCAGGCAATAGAGAATCCGAATGTTCATCTTTCAAGTACAGAAAGCATAATGCCTAATTCCTTAAACATGCATTCATTGTTAAAAAGTGATCAACCTGAAAAATTGCACCCTTTGTCCAAAACCGATAAGCTCAAATTAGAATCCGAGGCTTTACCTGATAATATGTTTGACTTTCCTCCTTTCGAAGGCAACAATATTGAGGCCGCAAACCGATTAACATATCATAATCAAAACCAAAATCCATCACTCACTCAAACAAGTCCATGGCCTATGCAGCAGCCTCAGTTAGAATCATCGTTGTTGCATCCTCAACTGATTGATACGGTCCAACCTGATTCTTCTATTACAAACGGCATGCTTCCTCAGCTAGACGTTGATGAATGGATGCAGTATTCTTCTTGCCAACAACAAGTGGTGAACCCATCTATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAGGGATCTTTCGGATGAAAGCAATAACCAAAGTGAAATTTGTGCCAGTGTTGATGTTAGTAATAGTGTGAATAACACCACTATGGCTGATCCTTCTACTTCACACACCATTTTCGATGACTTTTGCACAATGAAGGAGAAAATTTTTCAGCAACCTCAAGATTGCATGGTCGGCAATTTAAGTTCTAGTCAGGATGGCCAGTCTCAGATAACCTCCGCAAGTCTAGCAGAGTCACACGCCTTTCCTCTGCGAGACAACTCGGGTGGTACATCTTCAAGCCAAGTTGATTTTGATGAAAGTAGCTTTCTGAATAATAACTCATGGAAGCAAGTAACTGCACCGATCCGAACCTACACAAAGGTGCAAAAAGCTGGTTCTGTAGGAAGATCAATTGATGTAACTACTTTCAAGAACTATGAAGAGTTGGTCCGCGCTATTGAATGCATGTTTGGATTGGACGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAATTAGTATATGTAGATTATGAGAGCGATGTTCTACTTGTTGGAGATGATCCTTGGGAGGAATTTGTGGGGTGCGTCCGCTGTATAAGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAGGGGATGAAGCTTCTCAACAGTGGAGCATTGCAAGGAATCAATGTTTGA 2565 0.4117 MSSLEEKVKGVGVGGVGGGLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLAYYFPQGHSEQVAASTRITATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPISEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRGNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQTEWDEPGCGDKQNRVSVWEIETPESLFIFPPLTSSLKRPFQSGFSENDWGTLLTRPFIKAPENGTMDLSNSMQNLYQENIMKMLYKPQVINNNGTFLPVMQQEYVPTRGPLQDMKSSQAIENPNVHLSSTESIMPNSLNMHSLLKSDQPEKLHPLSKTDKLKLESEALPDNMFDFPPFEGNNIEAANRLTYHNQNQNPSLTQTSPWPMQQPQLESSLLHPQLIDTVQPDSSITNGMLPQLDVDEWMQYSSCQQQVVNPSIPSMNQEVWDNYVKNFNLRDLSDESNNQSEICASVDVSNSVNNTTMADPSTSHTIFDDFCTMKEKIFQQPQDCMVGNLSSSQDGQSQITSASLAESHAFPLRDNSGGTSSSQVDFDESSFLNNNSWKQVTAPIRTYTKVQKAGSVGRSIDVTTFKNYEELVRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00099 854 FunFam Auxin response factor 310 382 - -
Trre2g00099 854 ProSiteProfiles PB1 domain profile. 748 832 IPR000270 GO:0005515
Trre2g00099 854 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 838 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre2g00099 854 FunFam Auxin response factor 144 248 - -
Trre2g00099 854 CDD B3_DNA 145 246 IPR003340 GO:0003677
Trre2g00099 854 FunFam Auxin response factor 743 837 - -
Trre2g00099 854 SUPERFAMILY DNA-binding pseudobarrel domain 136 275 IPR015300 -
Trre2g00099 854 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre2g00099 854 SUPERFAMILY CAD & PB1 domains 748 827 - -
Trre2g00099 854 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Trre2g00099 854 SMART B3_2 146 248 IPR003340 GO:0003677
Trre2g00099 854 Pfam AUX/IAA family 745 835 IPR033389 -
Trre2g00099 854 Gene3D - 744 837 - -
Trre2g00099 854 Gene3D - 310 382 - -
Trre2g00099 854 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Trre2g00099 854 Gene3D - 143 247 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00099 Trre-Chr2 734091 738395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00099 20 853 B3 DNA Binding Superfamily AT1G19850 58.597 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre2g00099 AUX_IAA 3.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00099 K14486 - gmx:100813003 1386.32