Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00090 ATGGACATGGACCTCGACGACCAAACTTCCGACCACAACAAAGATGGAAAACCCATTTTGGTAATCTTAGTGGGTGCACCTGGAAGCGGGAAATCAACCTTCTGTGAAGAGGTTATGCGTTCCTCTTCTCGTCCTTGGCTTCGCGTTTGTCAGGACACTATTGGAAATGGTAAAGCAGGAAGTAAAGCTCAATGCCTAAGTAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTCATTGACAGATGCAATCTTAACAGAGAACAAAGATCAGATTTTATAAAGCTTCGGGGTGAAAGCCAAATAGATATGCATGCAGTTGTACTTGATCTTCCCGCTAAGCTTTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCCGCTGCAGTTGTGAATAGAATGCTTCAAAATAAAGAGCTGCCCAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGTCAGAGTGAGAGTAATGTCAAAGATGCTATGGATACATACCAAAAACTTGGGCCACTGGAGAACCTTTCACATGGTTGCTTTGGTCAGAAAAATCCAGATTCAAAAATCCAATCTAGTGTAATGAAATTCCTGAAAAAGGCAGAGGTTCCAGTTGATACTGCATCTAAAGAAAATGTCATCGGAGGCTCTACTTCCCAGACTCCTGGGAAAAATGATTCCCTCTGCAAAGATACGGAAAACATTCCATCACCGCATGATAATTCCAAGTTAGCGTCAAAGGAAACAAAAGGCCAAGCTGATAAATATGCGGGTTCCTATCACAATCAAATTTCTTTGGATGATCCCCCAACTCTAGCGTTTCCATCTATTTCAACAGCTGATTTCCAATTCAACCATGATAAGGCAGCTGATATTATTGTTGAGAAGGTCGGAGAGTACTCAAATAAGATGGGGAATGCCAGGCTTGTACTAGTTGACTTGACACACAAGTCAAAGATTTTGTCCTTAGTTAAATCCAAAGTGGCAGAAAAGAACATTGATACCCAAAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTCATTCCACAGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAATTGGCGGCTAAAACCTGGTGGCGGAGGTGTTAATGCATCAATTTTTGATGCCGCAGGTCCTGAACTGGAGTCTGCAACCAAAGAAAAAGCGAAGACTCTTTCACCTGGGAATGCCGTTGTTGTCCCTCTACCTTCATCTTCTCCATTGTTCACAAGAGAATGTGTGACCCATGTAATACATGTCCTTGGACCTAACATGAATCCACAAAGACCAAATTGTCTGAACAGTGATTATGAAAAAGGCTGCAAAGTTCTCCAAGATGCTTATGCATCACTATTTGAAGGTTTTGTATCAATCGTTAGGAACCAGGTACAGCATAATGAAAACCTTGGGAAAAAGACTTTGGAGTTGCAGGATCAGTCTGAAAAGTGTTCCATAAATCATTCTACTAATTCTGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCGGAAAAAAGCAAGAAATACAAGGGAGCTCACGATGGTTTTGAATTGGCCTTTACGGGTTCTAAGGATGAAAAGGTAGATTCCGAGCATAGAAGAACCGATGGGAGCATGAGGAAGGCTTGGGGGTCATGGGCTCAAGTTCTTCACCAAATAGCTATGCATCCTGAAAATCATAAGGATGACTTGCTTGAAATTTCAGAAGACATTGTTGTATTGAATGATATGTATCCTAAGGCACAGAAGCATGTTCTGGTGTTGGCACGTAGTAGAGGTCTTGATTGCCTGTCAGATGTCCAAGAGGAGCACCTTTCGGTATTGAAAAGGATGCATGCAGTGGGTTTAAAATGGGCTGAGAAATTCTTGAGCGAGAATGCTTCATTAGTATTTCGCCTTGGATATCACTCGGCTCCGTCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAAAGCATTTGAAAAATAAGAAGCATTGGAACTCGTTTAACACTGCCTTCTTTCGTGACTCAGTAGATATAATTGAGGAGGTATCTAATCATGGAAAAGCAACATTGAAAGATGATGACAAACTACTGTCTATGGAGTTGAGGTGCCACAGATGTAAAAGTGCACATCCAAACATACCGCGCCTAAAATCACATATCAGTAGCTGCCGAGCACCCTTTCCTGCTTACCTACTCGAAAACGGCCGTTTGGTCAGTGCATGCACCAGGTAA 2271 0.4196 MDMDLDDQTSDHNKDGKPILVILVGAPGSGKSTFCEEVMRSSSRPWLRVCQDTIGNGKAGSKAQCLSSAARALKDGKSVFIDRCNLNREQRSDFIKLRGESQIDMHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQNKELPKLSEGFNRITFCQSESNVKDAMDTYQKLGPLENLSHGCFGQKNPDSKIQSSVMKFLKKAEVPVDTASKENVIGGSTSQTPGKNDSLCKDTENIPSPHDNSKLASKETKGQADKYAGSYHNQISLDDPPTLAFPSISTADFQFNHDKAADIIVEKVGEYSNKMGNARLVLVDLTHKSKILSLVKSKVAEKNIDTQKFFTHVGDITRLHSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTLSPGNAVVVPLPSSSPLFTRECVTHVIHVLGPNMNPQRPNCLNSDYEKGCKVLQDAYASLFEGFVSIVRNQVQHNENLGKKTLELQDQSEKCSINHSTNSDQKSKRDADHGSEKSKKYKGAHDGFELAFTGSKDEKVDSEHRRTDGSMRKAWGSWAQVLHQIAMHPENHKDDLLEISEDIVVLNDMYPKAQKHVLVLARSRGLDCLSDVQEEHLSVLKRMHAVGLKWAEKFLSENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDIIEEVSNHGKATLKDDDKLLSMELRCHRCKSAHPNIPRLKSHISSCRAPFPAYLLENGRLVSACTR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00090 756 Gene3D - 558 738 IPR036265 -
Trre2g00090 756 MobiDBLite consensus disorder prediction 504 523 - -
Trre2g00090 756 ProSiteProfiles Macro domain profile. 333 571 IPR002589 -
Trre2g00090 756 Gene3D Leucine Aminopeptidase, subunit E, domain 1 321 472 IPR043472 -
Trre2g00090 756 MobiDBLite consensus disorder prediction 220 250 - -
Trre2g00090 756 SUPERFAMILY Macro domain-like 326 465 IPR043472 -
Trre2g00090 756 MobiDBLite consensus disorder prediction 493 523 - -
Trre2g00090 756 FunFam aprataxin isoform X2 557 737 - -
Trre2g00090 756 MobiDBLite consensus disorder prediction 220 260 - -
Trre2g00090 756 FunFam Transcription factor bHLH140 326 473 - -
Trre2g00090 756 SUPERFAMILY HIT-like 553 720 IPR036265 -
Trre2g00090 756 Gene3D - 2 177 IPR027417 -
Trre2g00090 756 ProSitePatterns HIT domain signature. 645 663 IPR019808 -
Trre2g00090 756 FunFam Transcription factor bHLH140 7 177 - -
Trre2g00090 756 Pfam AAA domain 20 148 - -
Trre2g00090 756 Pfam Scavenger mRNA decapping enzyme C-term binding 563 676 - -
Trre2g00090 756 Pfam Macro domain 368 444 IPR002589 -
Trre2g00090 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 163 IPR027417 -
Trre2g00090 756 PANTHER APRATAXIN-RELATED 280 736 - -
Trre2g00090 756 Pfam C2HE / C2H2 / C2HC zinc-binding finger 681 734 IPR032566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00090 Trre-Chr2 667096 671686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00090 16 752 C2H2 Transcription Factor Family AT5G01310 57.802 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00090 K10863 - gmx:100786762 1172.92