Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00085 ATGCTTACAAGAAGAAAAATTCTCTCATTATTTTCATCTTCTCAACTAATTTCTCACAAATTGAATGCAAATGCACTTCCACATCCAATTCACAACCATTTCCCCCAAATTTCAAACAATTTTAGGGTTTTCTTATTCAATCTATATGGAACTCAAGATTCCAAGTTTCCTGAATACCAGATGCCTACTGTTACATGGGGAGTGATTCAAGGTCGAAAAGAGAAACTTGTTTCGCGTGTAATCATCTTCGATTACCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGATGTAATGAGGGAACGTGTTGAGTTTCTCCAGAAATTAGGTTTAACCATTGAGGATATTAATCAGTATCCTTTGATGTTGGGTTGTAGTGTGAGAAAAAATATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCAAGGTCTAAACTTGGTGAATTTGTTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTTTGTGTTACAAAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTGGCTTATCTTGTTAGTATTGGTGTTAGTCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGTATGAGAGTTGGTACTATGATAAAGCCTCTCGTTGATTACTTGGTCAATTTGGGGTTGCCTAAGAAGATTTTAGCTAGGATGTTGGAGAAAAGAGCTTATATACTTGGCTATGATCTTGAAGAGACGGTGAAACCAAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAGTGTTTGCCTTCGGTTATAGCTCAGTATCCACAGATTATCGGGCTGCCTCTTAAGGCTAAATTGTCTTCGCAACAGTATTTTTTCAGTTTGAAGCTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCGCAGGTGGTTAGTCTTCACCAAAATGTGATTATGAAACCAGTTGAGTTTTTACTTGGTAGGACAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGCCCTCAGTTGGTTGCGCTGCGAGTTGAACTCATGAAGAACAGTTATTTCTTCTTCAAAAGTGAGATGGAGAGACCTATAAATGAGCTTGTGGAGTTCCCTGAATACTTTACTTATAGTTTGGAATCAAGGATTAAACCTAGATACCAGAGGCTCAAGAGCAAGGGAATAAAATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCCATTATATCGAAACCGAAATTATAGGTCCTTCATTCTGTATTGGTGGGAAATTAGAGTTACCTGGGAATGACATAGTATCAGATGATGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACTGTTTCTCTTTAG 1509 0.3804 MLTRRKILSLFSSSQLISHKLNANALPHPIHNHFPQISNNFRVFLFNLYGTQDSKFPEYQMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGLTIEDINQYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGEFVKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRTIPSQDVASMVIKCPQLVALRVELMKNSYFFFKSEMERPINELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGHYIETEIIGPSFCIGGKLELPGNDIVSDDEEESDDEMLYRRTVSL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00085 502 PANTHER CGI-12 PROTEIN-RELATED 143 274 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 Gene3D Transcription termination factor 3, mitochondrial 108 245 IPR038538 -
Trre2g00085 502 Gene3D Transcription termination factor 3, mitochondrial 246 462 IPR038538 -
Trre2g00085 502 Pfam mTERF 144 452 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 FunFam Transcription termination factor mterf4, chloroplastic 108 245 - -
Trre2g00085 502 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 374 405 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 339 369 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 406 437 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 302 334 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Trre2g00085 502 FunFam Transcription termination factor MTERF4, chloroplastic 246 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00085 Trre-Chr2 642652 644160 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre2g00085 mTERF 1.9e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00085 K15032 - gmx:100809590 833.558