Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00084 ATGGCTCTCATCACTAATCCCTTGCCTGAACAATCCCACCCCAAAAAACAAATTCCAAAACACAACCATAAGAACCAACAACAGAATCATAAACAAAAACAGGAACAAAAACAAAAACAAAAACAAAAACCAAAACAGAAGCCACCATCTTCATGGGATCAAATAAAGAACATCCTAACTTGCAAACAGATCGAAGGTTCAAAAGTTCATGATCCTTCAAAACCAAATAACAACAATGGATACTCAAAATTGAGTTCATCTTGTAGCTCAATTTGTAGCTTCAGAGATGTTGTTCATGGAAACACTAGAGTTGTTCATAGGTCTGATAATTCATCACCAGAAAGTAGCATCTTGGGTCAAGAAACAAGTTTGCTCAAAAGAAAACCTGTTACTGCTTCATCAACAACTCGCTCTGCATCATGTTCTGGGAAATCATCCAACGGTGGTAGAAGCTACACGTCATCATCTTCTTCTTCAAGAGGAATGCAGTTTAGGAAGCTCTCTGGATGTTATGAATGTCACATGATCGTTGACCCTAGCAGGCTACCAATTCCTAGGAGCACAGTGTGTGCTTGTGATCAGTGTGGAGAGGTCTTCCCTAAAATTGAAAGCTTGGAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTGGGTCCAGAGGATTCGGGTCGGAACATAGTGGAGATAATCTTCAAGTCAAGTTGGTTAAAAAGAGAATCTCCAATGTGCAAGATCGAACGGATATTAAAAGTCCACAACACTCAACGCACAATCCAACGGTTCGAAGAATGCAGAGACTCCGTAAAGTCCCGTGCGTCCAACCCCACCAAGAAAAACCCCCGCTGTGCCGCAGACGGCAATGAACTTCTCCGATTCCACAGCACAACCTTATCCTGCCCACTCGGCGCACGTGGTTCCTCCGCCTTATGCGCCGCCGTACCAGGTTGCGGAGTCTGCACCATTATCCGGCACGGTTTTCAAAACAAAGGTGGAGTGAAGACCAATGCTAGCAGTGGTATGGCCCATGACAATTCAGTTGGAAGGATCGGAGAAGATTCTAGAAGAGCGATGCTTGTGTGCCGTGTGATCGCCGGAAAAGTGAAGCGCGTGGCGGAGGAAGGAGCGGCGCCGGCGACGTCGGAGGAGGAGAATGTGGCGTTTGATTCAGTTGCGGGAAATGCGGGAATTTACTCGAATCTCGAGGATCTAACCGTTTTCAATCCAAAGGCTATTCTTCCTTGTTTCGTAGTTATTTACAAGGTGCTTTCATAG 1275 0.4533 MALITNPLPEQSHPKKQIPKHNHKNQQQNHKQKQEQKQKQKQKPKQKPPSSWDQIKNILTCKQIEGSKVHDPSKPNNNNGYSKLSSSCSSICSFRDVVHGNTRVVHRSDNSSPESSILGQETSLLKRKPVTASSTTRSASCSGKSSNGGRSYTSSSSSSRGMQFRKLSGCYECHMIVDPSRLPIPRSTVCACDQCGEVFPKIESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRESPMCKIERILKVHNTQRTIQRFEECRDSVKSRASNPTKKNPRCAADGNELLRFHSTTLSCPLGARGSSALCAAVPGCGVCTIIRHGFQNKGGVKTNASSGMAHDNSVGRIGEDSRRAMLVCRVIAGKVKRVAEEGAAPATSEEENVAFDSVAGNAGIYSNLEDLTVFNPKAILPCFVVIYKVLS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00084 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 218 IPR013087 -
Trre2g00084 424 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 50 420 - -
Trre2g00084 424 SUPERFAMILY ADP-ribosylation 215 421 - -
Trre2g00084 424 Coils Coil 20 43 - -
Trre2g00084 424 MobiDBLite consensus disorder prediction 1 55 - -
Trre2g00084 424 ProSitePatterns Zinc finger C2H2 type domain signature. 190 213 IPR013087 -
Trre2g00084 424 Gene3D - 214 422 - -
Trre2g00084 424 MobiDBLite consensus disorder prediction 28 42 - -
Trre2g00084 424 MobiDBLite consensus disorder prediction 104 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00084 Trre-Chr2 630374 635031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00084 1 423 C2H2 Transcription Factor Family AT1G75710 61.242 8.62e-174 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g00084 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00084 - - aprc:113874200 569.696