Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00053 ATGGGTCGTGGAAGAATATCTATGGAACTTGTGCAAAAGGAGAAAACGAGGAAGAAAATATTTCTAATGAGAAAGAATGGTTTAATGAAAAAAGTGAATGAAATTTCTACTCTTTGTGATGTTGATGTTTGTGTGATTCTCTATGCTCCCAACTTTGAAGGGCAAGGATTTGTTGAACCTGAAACATGGCCTGAAGACACAAAAAAGGTACAAAGAATTCTTCAAAAGTACTACAATACAACAATTGATAGGCGTCCTTATAAGGTCTATGATGTTCAAGAGTATTTAAAAAAAAAGATGAAAATATTCGAATCTGAAATTTTCAAAGTGCACAAAGAGATGCTAAAGGTTATGTATCCATCGTGGAATGAATCTTTCAATTCTCTTAGAGAGGAACAATTGAGGTTATTTGCTAGCATCTTGGATTCAAAGGTTGATGCTTGTAATCAAAAGATGAATATGCTAAAAGGAGATGATAATGGAAAAGCAATAGCTGAATCACACAAGATTAATAAACTTAATACTCCTAATTTAACCTCAAATACAAGTAGCTACTTCAATCTCATGCAAAACAACTTATCTTACACTCCATTGATGGATATTAGTGATAAAAACCCCTTAGAGTTTTGGCCACTTGAATTGGGGCAGAGCTCTCAACCTTCTTCGATATTTTCCGGTGCACAAGCCTCTTATCAGGTGGAGTCTAAGGAGTCTTATCAATGCAAGCAAGTTGATGCTAATTGGGCTGATCAAATTGATGCTAATGTTACCTATGATCCTAAAATCGATACAAAAATGAAGAATGGAGCCGAAAACGATGAAAACTTGTCATCATACTATTACAATGGAAATACACCAGCAATGCAATCATATAATATTGCTATGCAGACTCTTCCAAACCCACCGTATGGATTTCAACTTAATGAATTTTATGATATATAG 942 0.3439 MGRGRISMELVQKEKTRKKIFLMRKNGLMKKVNEISTLCDVDVCVILYAPNFEGQGFVEPETWPEDTKKVQRILQKYYNTTIDRRPYKVYDVQEYLKKKMKIFESEIFKVHKEMLKVMYPSWNESFNSLREEQLRLFASILDSKVDACNQKMNMLKGDDNGKAIAESHKINKLNTPNLTSNTSSYFNLMQNNLSYTPLMDISDKNPLEFWPLELGQSSQPSSIFSGAQASYQVESKESYQCKQVDANWADQIDANVTYDPKIDTKMKNGAENDENLSSYYYNGNTPAMQSYNIAMQTLPNPPYGFQLNEFYDI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00053 313 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre2g00053 313 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre2g00053 313 SUPERFAMILY SRF-like 2 100 IPR036879 GO:0003677|GO:0046983
Trre2g00053 313 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre2g00053 313 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre2g00053 313 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre2g00053 313 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 51 IPR002100 GO:0003677|GO:0046983
Trre2g00053 313 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Trre2g00053 313 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre2g00053 313 PANTHER MADS BOX PROTEIN 3 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00053 Trre-Chr2 433834 434775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00053 1 145 Type I MADS-box Gene Family AT5G55690 37.671 4.74e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre2g00053 SRF-TF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00053 - - tpra:123913303 409.453