Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00045 ATGTGGGTGAGATTAGTGACAATTTTTCTTGTTTTGTTGGGTAGATTATCCAACATTGCAATTGCACAAGCTACCAATGCAGCATTTCCAGCGGTGTTTGCATTTGGTGACTCAATCTATGACACTGGAAATAATAACAACCTTTTAACTGCATCTAAGTGTAACTTTCCTCCGTACGGAAAGGATTTCTACGGAGGACAGGCTACCGGAAGATTCGGCAATGGCCGAGTTCTATCAGATTTGATAACTTCGGCTTTGGGAGTGAAAGACACATTGCCAGCATACTTGAATCCAGCTTTAACGCCGCAAGACCTTCCTACCGGGGTATGCTTTGCATCAGGTGGTTCAGGTTTTGATGATTTGACAGCAAACATGCAGGGAGGAGTATTGACAATGGGGCAACAATTGAGATATTTCGAACAATACATAGAAAAGCTTAAAGCAGTTGTTGGAGCCGAAAAGGCAGCAGATATCATATCTAAAGCTTTGTTTATAATATCAGCAGGAAACAATGATGTTGCATTTGCTTATTCTTTTACTATAAGGAGAGCTTTGCCTTTCGATGTATATTGCGGTCAATTAGTTAGCGCAGCTCAAAATTTTCTTAAGAGTCTATATAAATTGGGAGCACGACACGTGTGGGTTCAAAGTACAGTGACATTGGGATGCTTACCTGCAGCTAGAACAATGACAGGACCATTAAGGTTATGTGTAGATTATGAGAATATGTACGCACAACAATTTAATGGCATGTTATCAGCAGGTGTTGCAAATCTTAAAGGCTCCCTTCCTGATTATGATCTTAGATTTGTTGATGTCTTTACTCCTATGCTTCGTCTCATTCAGAATCCTTTTGCAGCAGGGTTCGTAAATGTGTGGAACGGATGCTGTGGAACAGGAACATTTGAAATGGGACCAGCATGCAACATGTTAACATTCCAATGTCCAAGTACTGCACAATACTTTTTCTGGGATGTTGCTCATCCTACCGAGACAGCTTATCAAGCCACTCTTGCTCAATTGCTACATGCTCAAAACTATGATCTTACTAGTTACAATATTACCAAAACTCTTCATCCTTTGAATGTATCAAATCTTATTTTTTAA 1107 0.3984 MWVRLVTIFLVLLGRLSNIAIAQATNAAFPAVFAFGDSIYDTGNNNNLLTASKCNFPPYGKDFYGGQATGRFGNGRVLSDLITSALGVKDTLPAYLNPALTPQDLPTGVCFASGGSGFDDLTANMQGGVLTMGQQLRYFEQYIEKLKAVVGAEKAADIISKALFIISAGNNDVAFAYSFTIRRALPFDVYCGQLVSAAQNFLKSLYKLGARHVWVQSTVTLGCLPAARTMTGPLRLCVDYENMYAQQFNGMLSAGVANLKGSLPDYDLRFVDVFTPMLRLIQNPFAAGFVNVWNGCCGTGTFEMGPACNMLTFQCPSTAQYFFWDVAHPTETAYQATLAQLLHAQNYDLTSYNITKTLHPLNVSNLIF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00045 368 Gene3D SGNH hydrolase 18 347 IPR036514 -
Trre2g00045 368 Pfam GDSL-like Lipase/Acylhydrolase 32 336 IPR001087 GO:0016788
Trre2g00045 368 PANTHER GDSL ESTERASE/LIPASE EXL3 13 339 - -
Trre2g00045 368 SUPERFAMILY SGNH hydrolase 32 341 - -
Trre2g00045 368 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 32 43 IPR008265 GO:0006629|GO:0016298
Trre2g00045 368 CDD SGNH_plant_lipase_like 30 344 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00045 Trre-Chr2 395542 397236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00045 6 343 Pollen Coat Proteome AT1G75910 40.173 6.46e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00045 - - mtr:11422775 599.356