Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00041 ATGGCCCAAACTACACCTAATCACACACAAACCGTATCTGGTTGGGCTGCTCATGATTCTTCCGGCAAGATTACTCCATACACCTTCAAAAGAAGGGAGAACGGTGTTACTGATGTGACTATAAAGATTTTGTATTGTGGAATTTGTCACACTGATCTCCACCATGCCAAAGATGACTGGGGCATTACCATGTACCCTGTTGTTCCTGGGCATGAGATAACAGGGATTATCACGAAAGTAGGGAGTGATGCAAATGGTTTCAAAGAAGGAGACAGAGTTGGTGTGGGATGTTTGGCTGCTTCATGTTTGGATTGTGAGTATTGCAAGACAGATCAGGAGAATTACTGTGAAAAGTTGCAGTTTGTGTACAATGGTATTTTCTGGGATGGTAGCATCACCTATGGTGGCTACTCACAGATGTTGGTCGTAGATTACAGATATGTAGTACACATACCAGAAAGCTTACCAATGGATGCAGCTGCACCTCTATTGTGTGCTGGAATAACAGTATTTAGTCCATTAAAGGATCACAATTTGGTATCATCACCAGGGAAGAAAATTGGTGTGGTTGGTTTGGGAGGACTTGGTCACATGGCTGTCAAATTTGGTAAAGCATTTGGTCATCATGTTACTGTCATTAGCACTTCTCCGTCCAAAAGAGCCGAGGCTAAGGAACGTTTGGGAGCTGATGATTTCATAATCAGCACCAATCCTGACCAATTGCAGGCTGCAAAGAGGAGTCTAGATTTCATTTTGGACACCGTATCGGCAGAACATACTCTCTTGCCTATCTTAGAATTGCTCAAAGTAAATGGGACTTTATTTATCGTTGGTGCACCCGACAAGCCATTGCAATTGCCTGCTTTCCCATTGATATTTGGGAAAAGATCCATAAAAGGTGGGATCATAGGAGGAATAAAAGAGACACAAGAAATGTTGGATGTTTGTGGGAAGCATAATATCACATGCGATATTGAGTTAATCAAAGCGGACACAATCAACGAGGCTTTTGAACGTCTTGTGAAGAATGATGTTCGCTACCGTTTCGTCATTGACATAGCTAATGCTACTCCCACCCAAGATATTTAA 1089 0.4224 MAQTTPNHTQTVSGWAAHDSSGKITPYTFKRRENGVTDVTIKILYCGICHTDLHHAKDDWGITMYPVVPGHEITGIITKVGSDANGFKEGDRVGVGCLAASCLDCEYCKTDQENYCEKLQFVYNGIFWDGSITYGGYSQMLVVDYRYVVHIPESLPMDAAAPLLCAGITVFSPLKDHNLVSSPGKKIGVVGLGGLGHMAVKFGKAFGHHVTVISTSPSKRAEAKERLGADDFIISTNPDQLQAAKRSLDFILDTVSAEHTLLPILELLKVNGTLFIVGAPDKPLQLPAFPLIFGKRSIKGGIIGGIKETQEMLDVCGKHNITCDIELIKADTINEAFERLVKNDVRYRFVIDIANATPTQDI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00041 362 Gene3D - 15 353 - -
Trre2g00041 362 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Trre2g00041 362 CDD CAD1 14 352 IPR047109 GO:0016616
Trre2g00041 362 SUPERFAMILY GroES-like 17 180 IPR011032 -
Trre2g00041 362 Gene3D - 166 323 - -
Trre2g00041 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Trre2g00041 362 FunFam probable cinnamyl alcohol dehydrogenase 15 173 - -
Trre2g00041 362 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Trre2g00041 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Trre2g00041 362 FunFam Cinnamyl alcohol dehydrogenase 166 323 - -
Trre2g00041 362 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Trre2g00041 362 PANTHER ALDEHYDE REDUCTASE 7 355 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00041 Trre-Chr2 373031 375704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00041 14 356 Monolignol Biosynthesis Gene Families AT2G21890 58.309 9.66e-146 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00041 K00083 - gmx:100820588 624.78