Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00035 ATGTTGTTGGATGCGATACTTATGGCTCTCTTCTTGCCGTGTCTTGGCATGGCCGCTATCTTTATAATCTACATGTGTCTTCTCTGGTACGCCACCACTCACCCTACAGCCGCAGCAACAGCCGTCATTCTGAAGCCTGTCATCAATACAGGCCTTTCCCCTTCGGAACTCCAAAAGATACCCTGTATCGTCGGTAAAGAATTGGTGACAGGTCCGGAATGTGCAGTTTGCCTGGATGACATAGGTGAACAAGAATCGGCACGTGTGATTCCTGGTTGCAATCATTCATTTCATAAGGAATGCGCTGACACATGGCTTTCCAAACATCCTCTCTGCCCTGTTTGTAGAGCTAAGCTCGATGATCATCCTAACGCTTCCTCTCAAAATCCATGCTAA 396 0.4747 MLLDAILMALFLPCLGMAAIFIIYMCLLWYATTHPTAAATAVILKPVINTGLSPSELQKIPCIVGKELVTGPECAVCLDDIGEQESARVIPGCNHSFHKECADTWLSKHPLCPVCRAKLDDHPNASSQNPC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00035 131 SMART ring_2 74 115 IPR001841 -
Trre2g00035 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 130 IPR013083 -
Trre2g00035 131 SUPERFAMILY RING/U-box 68 122 - -
Trre2g00035 131 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Trre2g00035 131 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 121 - -
Trre2g00035 131 Pfam Ring finger domain 73 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00035 Trre-Chr2 332963 333358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00035 2 131 C3H Transcription Factor Family AT5G42200 48.551 9.58e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00035 K19037 - gmx:100817919 182.57