LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g00024	ATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCCACATTGGATGGATATTCATTAGATGTTTTTGTTGTTGATGGTTGGGTAGGCAAGGATACTGAGAGACTCAAGCATGAAGTGACAAAGAAAATGCAGAAACTTGAGGAAGATCAACGGTTCCCCCTTCTCCCTTTTCGCAAGGAGACTGGGATACTAAAACATATTCCAACAAAGAAAATTAAGAAAATCGAGCAGCCCTGGTGCAATCTTCCTAAGGAGAAACCAGAGAAAATTTGGATGAACTATATCTCTAACCATGTAAACAAACCCGTCAGTAGAAATTATGTGTGGGAAATTGATGCAAGCTGTTTAAGATACGAGAAGAAAATTGGCTCCGGATCCGTCAGTGATTTGTACAAAGGCACTTATATTAATAAAGATGTGGCTATCAAAGTATTTAAGAATGGTAGTCTAAATGAAAATATGCAGAGGGAGTTTTCTCAGGAAATATTTATCACGAGTAAAATTCAGCATAAGAATGTTATCAAATTTATTGGTGCCTGTGCAAAACCAAACTTTCATCTTGTCACAGAATATATGTCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTCATACTTACTCTTCCTTCTTTGCTCAAAATAGCAATTGATGTCTCCCAAGGAGTGAATTATTTACACAAAAACAATATTATACATCGAGACCTCAAAACTGCAAATCTTTTGATGGATGAGAAAGGGGTAGTCAAAGTCGCTGATTTTGGTGTAGCCAGATTGCAAAATCAATCTGGTATAATGACTGCAGAAACTGGAACATACCGATGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAACCACAAAGCTGATGTTTTCAGCTTTGGGATTATTCTTTGGGAGCTGCTCACAAGAAAGCTTCCCTATGAAGATCTATCCCCATTGCAAGCAGCAATTGGAGTAGTACATAAGGATTTGAGGCCTGAAATCCCAAGGGATACTCATCCAAAGTTAGTGGAATTGATTCACCGGTGCTGGCATAAAGATCCGTGTTTAAGGCCCGATTTCTCAGAAATTCTCAAGTTTCTGCAGCACATTAACAACATGATAGCAGGCAAGAAGAAGGTTAAGGTTAAGGTTAAGGCTTAG	1224	0.384	MHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWVGKDTERLKHEVTKKMQKLEEDQRFPLLPFRKETGILKHIPTKKIKKIEQPWCNLPKEKPEKIWMNYISNHVNKPVSRNYVWEIDASCLRYEKKIGSGSVSDLYKGTYINKDVAIKVFKNGSLNENMQREFSQEIFITSKIQHKNVIKFIGACAKPNFHLVTEYMSGGNMYDFLHIQKVILTLPSLLKIAIDVSQGVNYLHKNNIIHRDLKTANLLMDEKGVVKVADFGVARLQNQSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGIILWELLTRKLPYEDLSPLQAAIGVVHKDLRPEIPRDTHPKLVELIHRCWHKDPCLRPDFSEILKFLQHINNMIAGKKKVKVKVKA	407

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre2g00024	407	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	73	393	-	-
Trre2g00024	407	ProSiteProfiles	Protein kinase domain profile.	140	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre2g00024	407	SMART	serkin_6	140	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre2g00024	407	Gene3D	Transferase(Phosphotransferase) domain 1	218	407	-	-
Trre2g00024	407	FunFam	Kinase suppressor of Ras 1	130	216	-	-
Trre2g00024	407	ProSiteProfiles	ACT domain profile.	3	81	IPR002912	-
Trre2g00024	407	Pfam	Protein tyrosine and serine/threonine kinase	141	388	IPR001245	GO:0004672\|GO:0006468
Trre2g00024	407	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	256	268	IPR008271	GO:0004672\|GO:0006468
Trre2g00024	407	Coils	Coil	53	73	-	-
Trre2g00024	407	Gene3D	Phosphorylase Kinase; domain 1	131	217	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g00024	Trre-Chr2	275956	281089	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g00024	1	404	MAP Kinase Kinase Kinase	AT4G35780	54.568	4.72e-157	453

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Trre2g00024		PK_Tyr_Ser-Thr	1.9e-66	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g00024	-		-	vra:106761427	507.679

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