Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00016 ATGGCGCATCAATCTTCTTCAAATGAAGGCGGCCCCAGCACCCTCAATGAAGACTCTTCAGATTCAACTGTTCACCTCAATATCAAGACTCTTGATTCCCGAATCTACACTTTTCAAGTTCACAAAAATATGCCCGTTTCGCTGTTCAAAGAGAAAATTGCAAATGAAATAGGTGTTCCAGTTAGTCAGCAACGACTAATATTTAGAGGAAAAGTCTTAAAGGATGAACATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACGTTGCATTTGGTTGAAAGACAGCCAAGTCAGTCACAGACTCCTGGTACAGGGTCCGGTGAGACAACCAGCACAACCGGTAACCGAGGAAACGATGTTGGATCAGGAGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTGGTTCTTGGGACTTTTAATGTGGGGGAACAGGGTGAAGGCATTTCTCAAGACCTTACTCGGGTTATTGGGGCAGTTTTGAATTCTTTTGCGAATGGGGGCCAGAGCACAATTAATGTTCCTAATTCCACACAAAATTCTTCAGCTCCACCGGGGAATGAAACTGAAGGAAATCAAGCTGGAAATCAAAGCCTAGCCGGAAATCTGGCGTCATCTGGACAGGCATTTCCTGGTCAAGCATTCCAATCACTGCCTCATGTTGTTCAGATTCCTATGGCTGCAGGAGCTATACCTGTTCCTTCTTTCAATGCACCAATTCCTGATTCACTGAGCACGCTGTCTGAGTTCATAAATCGCATGGAACATACACTTTCACGAAATGGTTATGGGCCAAATGTATCTTCAACTAACCTTGGAGATCAACGAGTGGAATTGCCTTCCAATACACAAGGGTTGCCGACACTTGAAGCACTGACCACTGTATTGCATCGTGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGCGCTATCTCACATTGCAGGGCGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTATAAGAGGTCAAATACAGTCAGAGTCAGCACAGATAGGAATTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTGGGCCGAACTATGTTAACACTGCGAATGGGACGGTCTTCTGCAGAATCGGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCCATCAGGGCCGAATCCTATAATGGTGCAGCCATTTCCACTTCAGACAAGTTCCCTCTTTGGCGGCCCACTTTCTTCTTCAACTCCTGCAACTTTAGGCACTGTTGGTGTTGGAAGTGCTCCTAGGAACGTAAACATTCACATACACGCTGCTGCAATCGGCTCTAGACCAAATAATGGGGAAGGGACGAGGAATGAACACCGTAATGATCCTGGTTCTGGAGATTCAGGTTCGACACGGGTTTTACCTGTTAGAAATGTTATATCAGCAACTCTCCCATCCAACCCTTCTGGCATCGGAGCTGCTGGTAGCACACCAACTGGATTTAGTATTTCTACTTCACAGCTACCACCTGATTCGGCTCCATTATCATCTGTTTTAGCGGAAATCCATTCTCGCCTTAGAAACTCTGTTGGCAATATGCAAGGAGATAGCACAGTTCTGTCAGGCCAAATGCAATCAGCTACCAGGGACTTGTCTTCTGGATCTGAACCAAGACCCGCACATGTAAATGAACAGAGAGATACTGTGGAGACAAATGGATGTGGGGATGCCGGTGCATCCTCAGTTGGTTGCACTTCTGAAAGTGTAGTAGAGAAGCCCCAAACTGAGGCAATCAAAACCTGTAGTAATGATGGGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAAACAAGATTTACAAAGTTCTTCTAGTGGAGAAACAACGGTAAAATCAGAGAAAGTGCAGGATGCTCCATCTGTAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGACTGGGTGCGAGTGGTTTGGAGCGTAAGAAACGAACCAGACTTCAACCTCCACCTACTGTTGGTAAAGCTGCTGATGACGGATCCTCCAGTTCTTCCATCAATCGAAGTCAGGAAACAAGGACAGATAGTCAAAATATATTGCAAACACTCGCGAGTCAAGGATCTGCTGTTAATTTGATAAATGCTGACAGGCCATCATCTCAGCGGCCCATACCCTCCGGTGGTAGTCAGATTGATGTGGCGGGTTTAATGTCTCAGGTTCTACATAGTCCTGCTCTGAATGGTTTACTGGAAGGGTTTTCACAGCAAACAGGAGTTGACTCACCTGATGGCTTAAGGAACATGTTGCAACAGTTCACTCAAAGCCCACAGATGATGAACACGGTCAATCAGATTGCCCAGCATGTTGGCAGTCAGGATATGGGGAACATGTTAACTGGAACGGGAAGAGGGCAGGGTGGCGGCGTTGATTTTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCATTATTCTCTGCCGCAGAACCAGAAACCCGTGCACCCTACAGGAATGAAAATTCCGATAATCGAAGCTTACAGCTTGATCTTCAACCAGTGGTAGAGAGGATTGATCACCCAAGTCCACCTACAGATGTCTTCCGCGCTGTAGCTGAAAATGCTGTACAGCTGTCTGGCAGTGGAAGTGCTTCTGATGATCTTCTGGATGAGTTATGTTGCAATGAAAGTCTTGCCAGTGAATATGTGGAGATGCTGCGATATGATGTAAATCAGCTGCTTGAAGGACGTTCGAAGAGGGACAAGTCCTAA 2790 0.4591 MAHQSSSNEGGPSTLNEDSSDSTVHLNIKTLDSRIYTFQVHKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPSQSQTPGTGSGETTSTTGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGISQDLTRVIGAVLNSFANGGQSTINVPNSTQNSSAPPGNETEGNQAGNQSLAGNLASSGQAFPGQAFQSLPHVVQIPMAAGAIPVPSFNAPIPDSLSTLSEFINRMEHTLSRNGYGPNVSSTNLGDQRVELPSNTQGLPTLEALTTVLHRAEQLLSGQAVSALSHIAGRMEREGTSADLGIRGQIQSESAQIGIAMQHLGALLLELGRTMLTLRMGRSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPLSSSTPATLGTVGVGSAPRNVNIHIHAAAIGSRPNNGEGTRNEHRNDPGSGDSGSTRVLPVRNVISATLPSNPSGIGAAGSTPTGFSISTSQLPPDSAPLSSVLAEIHSRLRNSVGNMQGDSTVLSGQMQSATRDLSSGSEPRPAHVNEQRDTVETNGCGDAGASSVGCTSESVVEKPQTEAIKTCSNDGRDVLVDKFVSSSSKQDLQSSSSGETTVKSEKVQDAPSVSERRDVTEPAKTAPLGLGASGLERKKRTRLQPPPTVGKAADDGSSSSSINRSQETRTDSQNILQTLASQGSAVNLINADRPSSQRPIPSGGSQIDVAGLMSQVLHSPALNGLLEGFSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIAQHVGSQDMGNMLTGTGRGQGGGVDFSRMFQQMMPIVSQALGGGNPPSLFSAAEPETRAPYRNENSDNRSLQLDLQPVVERIDHPSPPTDVFRAVAENAVQLSGSGSASDDLLDELCCNESLASEYVEMLRYDVNQLLEGRSKRDKS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00016 929 MobiDBLite consensus disorder prediction 172 207 - -
Trre2g00016 929 MobiDBLite consensus disorder prediction 557 584 - -
Trre2g00016 929 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Trre2g00016 929 FunFam Large proline-rich protein BAG6 16 109 - -
Trre2g00016 929 MobiDBLite consensus disorder prediction 606 629 - -
Trre2g00016 929 Gene3D - 13 108 - -
Trre2g00016 929 SMART ubq_7 24 95 IPR000626 GO:0005515
Trre2g00016 929 MobiDBLite consensus disorder prediction 435 463 - -
Trre2g00016 929 MobiDBLite consensus disorder prediction 478 503 - -
Trre2g00016 929 MobiDBLite consensus disorder prediction 534 584 - -
Trre2g00016 929 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g00016 929 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 16 928 - -
Trre2g00016 929 MobiDBLite consensus disorder prediction 92 121 - -
Trre2g00016 929 CDD Ubl_ubiquitin_like 26 93 - -
Trre2g00016 929 MobiDBLite consensus disorder prediction 674 692 - -
Trre2g00016 929 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
Trre2g00016 929 PRINTS Ubiquitin signature 55 75 IPR019956 -
Trre2g00016 929 PRINTS Ubiquitin signature 76 97 IPR019956 -
Trre2g00016 929 PRINTS Ubiquitin signature 34 54 IPR019956 -
Trre2g00016 929 MobiDBLite consensus disorder prediction 606 692 - -
Trre2g00016 929 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Trre2g00016 929 MobiDBLite consensus disorder prediction 91 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00016 Trre-Chr2 213719 223614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00016 28 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.176 2.43e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00016 - - mtr:25482215 1340.1