Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00015 ATGGCGCATCAATCTTCTTCAAATGAAGGCGGCCCCAGCACCCTCAATGAAGACTCTTCAGATTCAACTGTTCACCTCAATATCAAGACTCTTGATTCCCGAATCTACACTTTTCAAGTTCACAAAAATATGCCCGTTTCGCTGTTCAAAGAGAAAATTGCAAATGAAATAGGTGTTCCAGTTAGTCAGCAACGACTAATATTTAGAGGAAAAGTCTTAAAGGATGAACATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACGTTGCATTTGGTTGAAAGACAGCCAAGTCAGTCACAGACTCCTGGTACAGGGTCCGGTGAGACAACCAGCACAACCGGTAACCGAGGAAACGATGTTGGATCAGGAGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTGGTTCTTGGGACTTTTAATGTGGGGGAACAGGGTGAAGGCATTTCTCAAGACCTTACTCGGGTTATTGGGGCAGTTTTGAATTCTTTTGCGAATGGGGGCCAGAGCACAATTAATGTTCCTAATTCCACACAAAATTCTTCAGCTCCACCGGGGAATGAAACTGAAGGAAATCAAGCTGGAAATCAAAGCCTAGCCGGAAATCTGGCGTCATCTGGACAGGCATTTCCTGGTCAAGCATTCCAATCACTGCCTCATGTTGTTCAGATTCCTATGGCTGCAGGAGCTATACCTGTTCCTTCTTTCAATGCACCAATTCCTGATTCACTGAGCACGCTGTCTGAGTTCATAAATCGCATGGAACATACACTTTCACGAAATGGTTATGGGCCAAATGTATCTTCAACTAACCTTGGAGATCAACGAGTGGAATTGCCTTCCAATACACAAGGGTTGCCGACACTTGAAGCACTGACCACTGTATTGCATCGTGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGCGCTATCTCACATTGCAGGGCGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTATAAGAGGTCAAATACAGTCAGAGTCAGCACAGATAGGAATTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTGGGCCGAACTATGTTAACACTGCGAATGGGACGGTCTTCTGCAGAATCGGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCCATCAGGGCCGAATCCTATAATGGTGCAGCCATTTCCACTTCAGACAAGTTCCCTCTTTGGCGGCCCACTTTCTTCTTCAACTCCTGCAACTTTAGGCACTGTTGGTGTTGGAAGTGCTCCTAGGAACGTAAACATTCACATACACGCTGCTGGTGCCTCTCTTGCACCAATTGTTTCAGCAATCGGCTCTAGACCAAATAATGGGGAAGGGACGAGGAATGAACACCGTAATGATCCTGGTTCTGGAGATTCAGGTTCGACACGGGTTTTACCTGTTAGAAATGTTATATCAGCAACTCTCCCATCCAACCCTTCTGGCATCGGAGCTGCTGGTAGCACACCAACTGGATTTAGTATTTCTACTTCACAGCTACCACCTGATTCGGCTCCATTATCATCTGTTTTAGCGGAAATCCATTCTCGCCTTAGAAACTCTGTTGGCAATATGCAAGGAGATAGCACAGTTCTGTCAGGCCAAATGCAATCAGCTACCAGGGACTTGTCTTCTGGATCTGAACCAAGACCCGCACATGTAAATGAACAGAGAGATACTGTGGAGACAAATGGATGTGGGGATGCCGGTGCATCCTCAGTTGGTTGCACTTCTGAAAGTGTAGTAGAGAAGCCCCAAACTGAGGCAATCAAAACCTGTAGTAATGATGGGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAAACAAGATTTACAAAGTTCTTCTAGTGGAGAAACAACGGTAAAATCAGAGAAAGTGCAGGATGCTCCATCTGTAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGACTGGGTGCGAGTGGTTTGGAGCGTAAGAAACGAACCAGACTTCAACCTCCACCTACTGTTGGTAAAGCTGCTGATGACGGATCCTCCAGTTCTTCCATCAATCGAAGTCAGGAAACAAGGACAGATAGTCAAAATATATTGCAAACACTCGCGAGTCAAGGATCTGCTGTTAATTTGATAAATGCTGACAGGCCATCATCTCAGCGGCCCATACCCTCCGGTGGTAGTCAGATTGATGTGGCGGGTTTAATGTCTCAGGTTCTACATAGTCCTGCTCTGAATGGTTTACTGGAAGGGTTTTCACAGCAAACAGGAGTTGACTCACCTGATGGCTTAAGGAACATGTTGCAACAGTTCACTCAAAGCCCACAGATGATGAACACGGTCAATCAGATTGCCCAGCATGTTGGCAGTCAGGATATGGGGAACATGTTAACTGGAACGGGAAGAGGGCAGGGTGGCGGCGTTGATTTTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCATTATTCTCTGCCGCAGAACCAGAAACCCGTGCACCCTACAGGAATGAAAATTCCGATAATCGAAGCTTACAGCTTGATCTTCAACCAGTGGTAGAGAGGATTGATCACCCAAGTCCACCTACAGATGTCTTCCGCGCTGTAGCTGAAAATGCTGTACAGCTGTCTGGCAGTGGAAGTGCTTCTGATGATCTTCTGGATGAGTTATGTTGCAATGAAAGTCTTGCCAGTGAATATGTGGAGATGCTGCGATATGATGTAAATCAGCTGCTTGAAGGACGTTCGAAGAGGGACAAGTCCTAA 2817 0.4594 MAHQSSSNEGGPSTLNEDSSDSTVHLNIKTLDSRIYTFQVHKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPSQSQTPGTGSGETTSTTGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGISQDLTRVIGAVLNSFANGGQSTINVPNSTQNSSAPPGNETEGNQAGNQSLAGNLASSGQAFPGQAFQSLPHVVQIPMAAGAIPVPSFNAPIPDSLSTLSEFINRMEHTLSRNGYGPNVSSTNLGDQRVELPSNTQGLPTLEALTTVLHRAEQLLSGQAVSALSHIAGRMEREGTSADLGIRGQIQSESAQIGIAMQHLGALLLELGRTMLTLRMGRSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPLSSSTPATLGTVGVGSAPRNVNIHIHAAGASLAPIVSAIGSRPNNGEGTRNEHRNDPGSGDSGSTRVLPVRNVISATLPSNPSGIGAAGSTPTGFSISTSQLPPDSAPLSSVLAEIHSRLRNSVGNMQGDSTVLSGQMQSATRDLSSGSEPRPAHVNEQRDTVETNGCGDAGASSVGCTSESVVEKPQTEAIKTCSNDGRDVLVDKFVSSSSKQDLQSSSSGETTVKSEKVQDAPSVSERRDVTEPAKTAPLGLGASGLERKKRTRLQPPPTVGKAADDGSSSSSINRSQETRTDSQNILQTLASQGSAVNLINADRPSSQRPIPSGGSQIDVAGLMSQVLHSPALNGLLEGFSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIAQHVGSQDMGNMLTGTGRGQGGGVDFSRMFQQMMPIVSQALGGGNPPSLFSAAEPETRAPYRNENSDNRSLQLDLQPVVERIDHPSPPTDVFRAVAENAVQLSGSGSASDDLLDELCCNESLASEYVEMLRYDVNQLLEGRSKRDKS 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00015 938 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Trre2g00015 938 MobiDBLite consensus disorder prediction 615 638 - -
Trre2g00015 938 MobiDBLite consensus disorder prediction 172 207 - -
Trre2g00015 938 MobiDBLite consensus disorder prediction 540 593 - -
Trre2g00015 938 Gene3D - 13 108 - -
Trre2g00015 938 SMART ubq_7 24 95 IPR000626 GO:0005515
Trre2g00015 938 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
Trre2g00015 938 MobiDBLite consensus disorder prediction 445 472 - -
Trre2g00015 938 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g00015 938 MobiDBLite consensus disorder prediction 92 121 - -
Trre2g00015 938 CDD Ubl_ubiquitin_like 26 93 - -
Trre2g00015 938 MobiDBLite consensus disorder prediction 615 701 - -
Trre2g00015 938 FunFam Large proline-rich protein BAG6 16 109 - -
Trre2g00015 938 MobiDBLite consensus disorder prediction 566 593 - -
Trre2g00015 938 PRINTS Ubiquitin signature 34 54 IPR019956 -
Trre2g00015 938 PRINTS Ubiquitin signature 55 75 IPR019956 -
Trre2g00015 938 PRINTS Ubiquitin signature 76 97 IPR019956 -
Trre2g00015 938 MobiDBLite consensus disorder prediction 683 701 - -
Trre2g00015 938 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Trre2g00015 938 MobiDBLite consensus disorder prediction 91 129 - -
Trre2g00015 938 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 16 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00015 Trre-Chr2 213719 223614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00015 28 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.176 2.45e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00015 - - mtr:25482215 1358.2