Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00009 ATGGTGTCGCTTCAACCAGTGACTTTCCCTTTCTCTTCTTCCTGTTTCCTTACTGGCTCTCTTCAGTTTTGTGGCTCCCTCTCCGCAAGCTTTGCCCCAAAACCGAGAAAACATCCCCCGCCTTTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTAGTATTCTCAGCGATTCCATTCACTGCAGTCAAAGCTATAGCTAATAGTCCGCTAGGGGGATCGCTTCAGAGGAAAATGGAAGAGACAAAGAAATCTGCTATACAAAACTCCTCTAAATTCAAGGCTGATGCTAACAAGGCCAGGAAAGAGAGCTTTTGGTATGGAGAAGGTCGGCCTCGTTGGCTCGGTCCTTTTTCATACGGCTACCCATCATATCTCATTGGGGAACTTCCCGGGGACTATGGCTTTGACATTGCTGCCCTTGCCAAGGATCCTGTGGCACTGGACAAATATTTCAACTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTGTGATTCCCGAGTTGTTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGGAGATACTCTAGATTATCTTGGCATCCCAGGTCTTCACTTGGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCAGAATACGCTAGATATTGTGGGATTGAGGCATTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCACTGTTTGATCCCTTAAATCTGTCCAAAGATCCTAAAGCTTTTGAAGAGCTAAAGGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGCTTCTTCATGCAAGCGGCACTGACGGGTAAAGGTCCTGTTCAGAACATTATGGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGGTTACTCAATTCAATGAAATTACACTAG 1002 0.4631 MVSLQPVTFPFSSSCFLTGSLQFCGSLSASFAPKPRKHPPPFICNASWQELAGVLVFSAIPFTAVKAIANSPLGGSLQRKMEETKKSAIQNSSKFKADANKARKESFWYGEGRPRWLGPFSYGYPSYLIGELPGDYGFDIAALAKDPVALDKYFNFEILHARWAMLASVGAVIPELLDLLGAFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPKAFEELKVKEIKNGRLAMMAWLGFFMQAALTGKGPVQNIMDHISDPFHNNLLGLLNSMKLH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00009 333 SUPERFAMILY Chlorophyll a-b binding protein 107 329 - -
Trre2g00009 333 Pfam Chlorophyll A-B binding protein 125 300 IPR022796 -
Trre2g00009 333 Gene3D Chlorophyll a/b binding protein domain 115 326 - -
Trre2g00009 333 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 80 325 IPR001344 GO:0009765|GO:0016020
Trre2g00009 333 FunFam Chlorophyll a-b binding protein, chloroplastic 115 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00009 Trre-Chr2 139712 150500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00009 43 329 Chloroplast and Mitochondria Gene Families AT1G76570 78.049 8.80e-175 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00009 K14172 - jre:109007729 538.88