Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00003 ATGGAGCTCGAGAATAGTAGAAGAATTATCGACCCAAGAAGTGGGTTCTGCAGCTCCAATTCAATCTTCTACAGTAAGAGGAAACCCCTTCCCCTCCCTCCAAACCACTCCTTAGACGCCACCACTTTCATCTCCTCTCGCCCCCATCACGGCCGCATCGCTTTCATCGACGCCTCCACCGGCCGTCAATTCACCTACCAACAACTCTGGCGAGCCGTAGACGCAGTCACCTCCTCTCTCTCCACCATGGGAATCAGTAAGGGTGATGTCATCCTCCTCCTCTCTCCCAACTCCATATACTTCCCTGTGGTGTGTCTCTCCGTCATCTCCCTCGGCGCCATCATCACCACCACCAATCCCCTCAACACAACACGCGAAATCTCAAAGCAGATCGCGGATTCCAAACCCGTCCTCGCCTTCACAACCCCTTCACTCGTTTCAAAAATCACCGGAGCATCGCCTTCACTCCCAATTATTCTCATGGAGACCAACGGGCACTCATCAAATACACTGGAGGAAATGATGAAGAAAGAACCCGCTTTGAGTAGGGTGAGAGAGCGAGTCAACCAGGACGATACTGCTACTCTACTTTACTCATCTGGAACGACCGGACCCAGCAAAGGAGTAATATCTTCGCAAAGGAACCTCATAGCGATGGTACAAATCGTATTGGCTAGATTCAGTAGGAAGGAAGAAGATGAGCGGGGACAAACATTCATATGCACGGTTCCAATGTTTCATATATATGGTCTTGCTGTGTTTGCTTTGGGGGTTCTCGCTTTGGGTTCAACCACAGTTGTTCTATCCAAGTTCGAGATCCACGATATGCTTTTATCCATTGAGAAATTCAAAGCATCGTACCTGCCGCTTGTGCCGCCCATACTGGTGGCTATGCTGAACAACGCGGATGCGATTAAGAGCAAGTACGATTTGAGTTCCCTTCAGGCAGTGCTCTGCGGAGGAGCTCCTCTGAGCAAAGAGGTTACGGAAGGGTTTGTTGAGAAGTACCCAAACGTTACTATATTTCAGGGTTATGGTCTGACGGAATCCTCTGGAGTCGGGAGTTCCACTGAATCTTTGGAAGAGACTCGTAAGTACGGCACGGCTGGGCTTGTTTCTGCTTCCACGGAGGCTATGATTGTTGACACTGAAACTGCTCAACCATTACCGGTTAATCGGACCGGTGAGCTTTGGCTCCGGGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAAGAGGCAACTACATCAACCCTTACTTCAGAGGGTTGGTTAAAAACAGGGGATATTTGCTATATTGATACAGATGGATTCTTATTTGTCGTGGATCGCTTGAAAGAGCTCATTAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTTGAGGCTTTGTTGCTGACTCATCCTTCTATTTTAGATGCTGCAGTCATACCGTATCCAGATAAGGAAGCAGGGCAATATCCAATGGCATATGTAGTAAGGAAAACCGGAAGTAATCTATCAGAAACTCAAGTTATGGATTTTGTTGCAGAGCAGGTTTGTTTGTTTGAACACTTCTAA 1560 0.4788 MELENSRRIIDPRSGFCSSNSIFYSKRKPLPLPPNHSLDATTFISSRPHHGRIAFIDASTGRQFTYQQLWRAVDAVTSSLSTMGISKGDVILLLSPNSIYFPVVCLSVISLGAIITTTNPLNTTREISKQIADSKPVLAFTTPSLVSKITGASPSLPIILMETNGHSSNTLEEMMKKEPALSRVRERVNQDDTATLLYSSGTTGPSKGVISSQRNLIAMVQIVLARFSRKEEDERGQTFICTVPMFHIYGLAVFALGVLALGSTTVVLSKFEIHDMLLSIEKFKASYLPLVPPILVAMLNNADAIKSKYDLSSLQAVLCGGAPLSKEVTEGFVEKYPNVTIFQGYGLTESSGVGSSTESLEETRKYGTAGLVSASTEAMIVDTETAQPLPVNRTGELWLRGPTIMKGYFSNEEATTSTLTSEGWLKTGDICYIDTDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPSILDAAVIPYPDKEAGQYPMAYVVRKTGSNLSETQVMDFVAEQVCLFEHF 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00003 519 CDD 4CL 32 513 - -
Trre2g00003 519 Gene3D - 20 446 IPR042099 -
Trre2g00003 519 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 518 - -
Trre2g00003 519 Pfam AMP-binding enzyme C-terminal domain 460 513 IPR025110 -
Trre2g00003 519 SUPERFAMILY Acetyl-CoA synthetase-like 47 513 - -
Trre2g00003 519 FunFam Long-chain-fatty-acid--CoA ligase FadD 24 446 - -
Trre2g00003 519 Pfam AMP-binding enzyme 48 451 IPR000873 -
Trre2g00003 519 Gene3D - 447 518 IPR045851 -
Trre2g00003 519 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00003 Trre-Chr2 89560 92743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00003 9 517 Monolignol Biosynthesis Gene Families AT1G20500 64.479 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00003 K10526 - gmx:100811344 776.548