Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06443 ATGGACAAGTTGTGGAGCTTCTCGTCAAGAACAAATAATGTTGTTGACACCGAAAGGCAACGATGGGAAGAAGAGAGGGATAATCTTCATGAACAATTAGATGATTTGGTCCCTCTCTCACAGGTTTTAGAGGATGTGGATTGTTTTCTTGATAACGCAACAAGTCATAGTTATAGGGAAGAAGTTCCAAATTGTGTTGTTGTGTTGCACAAATTGTTGGAATCTACAATGGATAAATATAATAAAGGGTGTAACGGAAGAAGAAGCAAGTTTGGAAAAGATCCAAAGGATGACAACTCATTTCTATATATGGTGGATCGCATCTTCAAGCTATCTACCACCACCTTGAATTTGAGTGATTTCTATTTAGACCAAACAAGCTCTATCCTAGAAAGAGTTATGTTTATTTTAGAGAATGACCTTTGTGCTCTTTTACAAGACCCAGTATCCAAATATTGCAGACCAACCCCACCACCCAAGAAATCGTCCTCCTTTGGTTCCCTTCAGTTTCAGTTTCAACTTCAAGATGAGAGGGAATCTCTAAAGCCCAACAACCCAAATATTGATGAGGGTGAGGAGGATGACGACTTATTATTGCCAACTTTCTCTACGGAAGACCTTTCCATTCTAAACAAGATTGCGACTGTCATGATCAATGTGGGCTATCATACAGAGTGTTGCATGGCTTTTACCAATTTTAGACGAATTGCTTTCAAAAATGTGTTGCAAAAATTGGGATACACATGCATAAGGATGGACGAGGTTTATAAAATGCAATGGGGGTCGTTGGAAGGAGAAATTGCGACATGGAACAGAGTGTTTCGGCATTGCACTAGTGTGCTCTTCAACACCGAAAAAAAATTATATAATTCAGTATTTTCAAATCAGCCACATATTTCTAGAGTCGTATTTAGTGACATTGCCCAAGCTGTCATCGTCAACTTTCTAAACTTTGCACAAGCAGTTGTTTTAACCAAGCCATCACCAGAAAAACTTTTCAAATTCCTTGATATGTATGAGACCTTAAGGGATGAAGTGGAGTCTGTCATCGTACTCATTAATGATGACGGTTCAGAGCAGTGTGCCAAAGATTTGGGGTACGAACTGGCTGCAGCAAAGCATGGGATCATAGAGGCTGTTGTGGCAATGTTTTATGATTTGGAAAACTCTATTAAGGGTGACAATGAAAGGATTCCAGTCCCCTACGGCGCGGTTCATCCATTGACTCGTTATGTAATGAATTATCTTAAATATGCATGTGAATACAAAGTGACGTTAGAGCAAGTGTTTTGCCAATATTGTACGAATCATTATCTTACTACTATTGATCGTCATTATATTAATAATAATAATAAGGGTACATCCACTGCCACCACAAAGATTCAAAATGAAGAAAATAATACACCAGAATTGGATGAAACGCCAAAGAAATCACCTTTTGTGGTTCAATTGATGACAATTATGGACCTTTTAGATGTAAATACTGAAAGAAAATCCATGCTATATAGGGATATGGCTTTACGTTGTATTTTTCTAATGAACAATGGAAGATACATAGTACAAAAGATTAAAGGGTGTGTTGATCTTCATGAGTCCATGGGCGACAATTGGTGTAGAAGGATGCAATCAAGTCTGAGGTTGCACCATAAGAGTTATCAGAGAGAGACTTGGACCAAGGTGGTACAATGCCTCAACCCCGATGGTTTGCAACAGCAGGGGAACAAAGTGTCTAAGCAAATTTTGAGAGAGAGGTTTAAGTGCTTTAATTCCATGTTTGAAGAGATCCACAAGACACAAAGCAGTTGGATCGTAAGCGATGAACAACTTCAATCAGAGCTAAGAGTTTCAATATGCTCTTTGGTCATACCTGCGTACCGCTCCTTTATGGGAAGATTCAAGCATCATCTAGAATCAGGCAAACATATTGACAAGTATATCAAGTATCATCCTGACGACCTTGAGACTTTGATTGATGATTTTTTTGTTGGAAATGCTACATCTATGCCTCGAAGGAGAACATGA 2022 0.3863 MDKLWSFSSRTNNVVDTERQRWEEERDNLHEQLDDLVPLSQVLEDVDCFLDNATSHSYREEVPNCVVVLHKLLESTMDKYNKGCNGRRSKFGKDPKDDNSFLYMVDRIFKLSTTTLNLSDFYLDQTSSILERVMFILENDLCALLQDPVSKYCRPTPPPKKSSSFGSLQFQFQLQDERESLKPNNPNIDEGEEDDDLLLPTFSTEDLSILNKIATVMINVGYHTECCMAFTNFRRIAFKNVLQKLGYTCIRMDEVYKMQWGSLEGEIATWNRVFRHCTSVLFNTEKKLYNSVFSNQPHISRVVFSDIAQAVIVNFLNFAQAVVLTKPSPEKLFKFLDMYETLRDEVESVIVLINDDGSEQCAKDLGYELAAAKHGIIEAVVAMFYDLENSIKGDNERIPVPYGAVHPLTRYVMNYLKYACEYKVTLEQVFCQYCTNHYLTTIDRHYINNNNKGTSTATTKIQNEENNTPELDETPKKSPFVVQLMTIMDLLDVNTERKSMLYRDMALRCIFLMNNGRYIVQKIKGCVDLHESMGDNWCRRMQSSLRLHHKSYQRETWTKVVQCLNPDGLQQQGNKVSKQILRERFKCFNSMFEEIHKTQSSWIVSDEQLQSELRVSICSLVIPAYRSFMGRFKHHLESGKHIDKYIKYHPDDLETLIDDFFVGNATSMPRRRT 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06443 673 Pfam Exo70 exocyst complex subunit 269 659 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre1g06443 673 SUPERFAMILY Cullin repeat-like 92 661 IPR016159 -
Trre1g06443 673 Coils Coil 12 32 - -
Trre1g06443 673 Gene3D Exocyst complex component Exo70 87 671 - -
Trre1g06443 673 PANTHER EXOCYST COMPLEX PROTEIN EXO70 54 662 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06443 Trre-Chr1 67346759 67348780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06443 89 672 EXO70 exocyst subunit family AT5G13150 47.324 1.44e-176 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06443 K07195 - mtr:25485763 1074.69