Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06442 ATGGGTTGTTTTTCGTGTTTCGATTCGAAGGAGGATGAGAAGCTGAATCCAAATCCTCAGCAGCAACAGCAGCAGCAGCAAGAAACCCATCATCACGATCATAATCTCCCCTCTCATGTTTCCAGATTGCCCTCTGCAGCCTCTGCAGGAGCAGAGAAACTGCGGTCAACAAGTAATGGAGGAGCATCCAAAAGGGAATTGACTGCTGCTCTCAAAGACGGGCCGCCGCCTGGCCAAATTGCCGCTCAAACTTTTACTTTCCGTGAACTTGCTGCTGCAACAAAAAATTTCAGGCCTCAGTCCTTTTTAGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGACGCCTGGAAACTACGGGTCAGGCTGTTGCTGTTAAGCAGTTAGACAGAAACGGTCTCCAGGGTAATCGTGAGTTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAACCTTGTCAGTCTCATTGGATACTGTGCGGATGGGGACCAACGCCTCCTGGTTTATGAATTTATGCCGTTGGGATCATTGGAAGACCACCTTCACGATCTCCCCCCTGATAAGGAGCCATTAGATTGGAACACTAGAATGAAAATAGCTGCCGGTGCTGCAAAAGGATTGGAATACCTCCATGACAAGGCCAATCCTCCAGTAATTTATAGGGACTTCAAGTCATCTAATATATTACTTGATGAAGGTTATCACCCAAAGCTTTCTGACTTTGGTCTGGCGAAGCTTGGTCCTGTTGGGGACAAATCACATGTTTCCACTCGTGTCATGGGAACTTATGGTTACTGCGCTCCTGAGTATGCTATGACTGGACAACTGACTGTAAAATCTGATGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTGATTACTGGCCGTAAAGCCATTGACAGCACCCGGCCCCATGGAGAACAAAACCTTGTTACATGGGCACGACCGTTGTTCAATGACCGTAGGAAGTTTCCAAAGTTGGCAGATCCACGATTGCAGGGTCGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCAGCTGCACGTCCTCTGATTGGGGATGTGGTAACGGCCCTCTCTTATCTAGCCAACCAGGCACATGACACTAACAATGCCGGCATTGGTAATAATAAGGGAACTAGAGATGATAAAGGTGGAAGAATATTACAAAATGATGAAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCACGTGAAACTGCAAGGATGTTAAACAGGGATCTTGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAAAGACGGCAGAGTGTGCAGGGCAGTTTTGATGCTTCTAATGCCTAG 1407 0.479 MGCFSCFDSKEDEKLNPNPQQQQQQQQETHHHDHNLPSHVSRLPSAASAGAEKLRSTSNGGASKRELTAALKDGPPPGQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPRLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAHDTNNAGIGNNKGTRDDKGGRILQNDEGGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSVQGSFDASNA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06442 468 SUPERFAMILY Protein kinase-like (PK-like) 80 371 IPR011009 -
Trre1g06442 468 PANTHER OS07G0668900 PROTEIN 3 383 - -
Trre1g06442 468 MobiDBLite consensus disorder prediction 449 468 - -
Trre1g06442 468 FunFam Serine/threonine-protein kinase PBS1 71 173 - -
Trre1g06442 468 Gene3D Transferase(Phosphotransferase) domain 1 174 395 - -
Trre1g06442 468 MobiDBLite consensus disorder prediction 380 434 - -
Trre1g06442 468 Gene3D Phosphorylase Kinase; domain 1 81 173 - -
Trre1g06442 468 FunFam Serine/threonine-protein kinase PBS1 174 389 - -
Trre1g06442 468 MobiDBLite consensus disorder prediction 1 62 - -
Trre1g06442 468 MobiDBLite consensus disorder prediction 409 434 - -
Trre1g06442 468 Pfam Protein kinase domain 100 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06442 468 ProSiteProfiles Protein kinase domain profile. 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06442 468 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Trre1g06442 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Trre1g06442 468 CDD STKc_IRAK 103 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06442 Trre-Chr1 67338044 67343547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06442 1 456 Glycoside Hydrolase AT3G07070 55.921 9.51e-171 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre1g06442 Pkinase 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06442 K13430 - gmx:100777987 795.038