Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06441 ATGGGTTGTTTTTCGTGTTTCGATTCGAAGGAGGATGAGAAGCTGAATCCAAATCCTCAGCAGCAACAGCAGCAGCAGCAAGAAACCCATCATCACGATCATAATCTCCCCTCTCATGTTTCCAGATTGCCCTCTGCAGCCTCTGGAGCAGAGAAACTGCGGTCAACAAGTAATGGAGGAGCATCCAAAAGGGAATTGACTGCTGCTCTCAAAGACGGGCCGCCGCCTGGCCAAATTGCCGCTCAAACTTTTACTTTCCGTGAACTTGCTGCTGCAACAAAAAATTTCAGGCCTCAGTCCTTTTTAGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGACGCCTGGAAACTACGGGTCAGGCTGTTGCTGTTAAGCAGTTAGACAGAAACGGTCTCCAGGGTAATCGTGAGTTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAACCTTGTCAGTCTCATTGGATACTGTGCGGATGGGGACCAACGCCTCCTGGTTTATGAATTTATGCCGTTGGGATCATTGGAAGACCACCTTCACGATCTCCCCCCTGATAAGGAGCCATTAGATTGGAACACTAGAATGAAAATAGCTGCCGGTGCTGCAAAAGGATTGGAATACCTCCATGACAAGGCCAATCCTCCAGTAATTTATAGGGACTTCAAGTCATCTAATATATTACTTGATGAAGGTTATCACCCAAAGCTTTCTGACTTTGGTCTGGCGAAGCTTGGTCCTGTTGGGGACAAATCACATGTTTCCACTCGTGTCATGGGAACTTATGGTTACTGCGCTCCTGAGTATGCTATGACTGGACAACTGACTGTAAAATCTGATGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTGATTACTGGCCGTAAAGCCATTGACAGCACCCGGCCCCATGGAGAACAAAACCTTGTTACATGGGCACGACCGTTGTTCAATGACCGTAGGAAGTTTCCAAAGTTGGCAGATCCACGATTGCAGGGTCGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCAGCTGCACGTCCTCTGATTGGGGATGTGGTAACGGCCCTCTCTTATCTAGCCAACCAGGCACATGACACTAACAATGCCGGCATTGGTAATAATAAGGGAACTAGAGATGATAAAGGTGGAAGAATATTACAAAATGATGAAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCACGTGAAACTGCAAGGATGTTAAACAGGGATCTTGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAAAGACGGCAGAGTGTGCAGGGCAGTTTTGATGCTTCTAATGCCTAG 1404 0.4786 MGCFSCFDSKEDEKLNPNPQQQQQQQQETHHHDHNLPSHVSRLPSAASGAEKLRSTSNGGASKRELTAALKDGPPPGQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPRLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAHDTNNAGIGNNKGTRDDKGGRILQNDEGGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSVQGSFDASNA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06441 467 Gene3D Phosphorylase Kinase; domain 1 80 172 - -
Trre1g06441 467 SUPERFAMILY Protein kinase-like (PK-like) 79 370 IPR011009 -
Trre1g06441 467 CDD STKc_IRAK 102 370 - -
Trre1g06441 467 MobiDBLite consensus disorder prediction 379 433 - -
Trre1g06441 467 PANTHER OS07G0668900 PROTEIN 3 382 - -
Trre1g06441 467 Pfam Protein kinase domain 99 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06441 467 MobiDBLite consensus disorder prediction 1 61 - -
Trre1g06441 467 ProSiteProfiles Protein kinase domain profile. 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06441 467 FunFam Serine/threonine-protein kinase PBS1 70 172 - -
Trre1g06441 467 FunFam Serine/threonine-protein kinase PBS1 173 388 - -
Trre1g06441 467 Gene3D Transferase(Phosphotransferase) domain 1 173 394 - -
Trre1g06441 467 MobiDBLite consensus disorder prediction 448 467 - -
Trre1g06441 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Trre1g06441 467 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Trre1g06441 467 MobiDBLite consensus disorder prediction 408 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06441 Trre-Chr1 67338044 67343547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06441 1 455 Glycoside Hydrolase AT3G07070 56.044 3.22e-171 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre1g06441 Pkinase 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06441 K13430 - gmx:100777987 793.112