Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06437 ATGGCAGCATTCAACGTTTCAGCACCGCCACTTTTCTCACCGTCAAATGTTGCAGATAGCAGCAGAGGCATAAGAAGAATCCGAGCTCTGAACCCTAACCCTAAAATTATCACCGGCATCGGATTTGGCCGTGAGAGATGTGTGAAACTGCTACGAAAACAACAACAGAACATTAGTAGTATTGCTGGTGCGAATTCTGCTGCGAGATTGCGAGTGAGGGCGGGCAGTGCTGCTGAAGAGGAAGTAACAGTACAGTCAAAAGTGACTCACAAAGTATACTTTGATGTAAGTATTGGAAATCCAGTTGGAAAGCTGGTTGGAAGGATTGTGATTGGACTCTTTGGTGACGATGTACCCCAAACTGCTGAGAACTTCCGTGCCCTTTGCACCGGTGAGAAGGGTTTTGGCTACAAGTCGTCTGCCTTCCATCGTGTCATCAAGGATTTTATGATTCAAGGAGGCGATTTTGACAAAGGAAATGGGACCGGAGGCAAAAGTATATATGGCCGTACTTTCAAAGACGAGAATTTTAAATTGTCTCATACTGGACCAGGAGTAGTTAGCATGGCAAATGCAGGTCCCAACACTAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACCCAGTGGCTGGATAAGAAGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCGCAGGAGACAGATCGTGGCGATCGTCCCCGAAAGAAGGTGGTTATCAGTGAATGTGGTGAGCTTCCAATTGCTTGA 774 0.4574 MAAFNVSAPPLFSPSNVADSSRGIRRIRALNPNPKIITGIGFGRERCVKLLRKQQQNISSIAGANSAARLRVRAGSAAEEEVTVQSKVTHKVYFDVSIGNPVGKLVGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKSSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTQWLDKKHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVISECGELPIA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06437 257 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 106 252 IPR002130 GO:0000413|GO:0003755
Trre1g06437 257 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 137 154 IPR020892 GO:0003755|GO:0006457
Trre1g06437 257 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 91 254 - -
Trre1g06437 257 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 103 253 IPR002130 GO:0000413|GO:0003755
Trre1g06437 257 Gene3D - 76 256 IPR029000 -
Trre1g06437 257 CDD cyclophilin_ABH_like 90 252 - -
Trre1g06437 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 213 228 IPR002130 GO:0000413|GO:0003755
Trre1g06437 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Trre1g06437 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 200 IPR002130 GO:0000413|GO:0003755
Trre1g06437 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 154 IPR002130 GO:0000413|GO:0003755
Trre1g06437 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 212 IPR002130 GO:0000413|GO:0003755
Trre1g06437 257 FunFam Peptidyl-prolyl cis-trans isomerase 77 257 - -
Trre1g06437 257 SUPERFAMILY Cyclophilin-like 87 254 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06437 Trre-Chr1 67321459 67322799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06437 107 251 U-box Gene Family AT5G67530 49.315 3.47e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06437 K03768 - gmx:100777088 352.058