Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06427 ATGTATCGTCCTCCTTCTTCTTCCGGTTCTTCCTCCTCCTCTTCTTCTCAGCAACAACAGAGCTCCATCAGCCAAACTGGACTTACAAGGTACGATTCAGCACCAGGTTCTCTCCTCGCCAGCACTGTTGATGCCGTCATAGGAGGAGGAGGATCGCGTCTTCTCCCACCTGGAACGGGAGGAGGACATCATTATTTCTCCGGAGACTCTAGCCAACAACAGCAGCAACAGCATCATCAGCAGCAGAGATCTTCTAATAATGCTTACGACGGCTTTGATGGATCGGCTTTGCTCCGTCAAAAAAGCTCTCCCGCTGGCTTCCTAAACCATCTAGCCACTCTCAATCATAATAATAGTGCGGGGTTCACAATCACAAGGGGGGGAAATGGAGGGTCAAGATTGAAGTCTGAATTGAGCTTCACAGGAGCAGGAGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGGTGTTGACTATGCAACATCAGCAGGAAATGGATCGTTGCACAATAATAGTACCAGTAGCTGGGGTGGACCTGATAATAACAATAACAATAATTCAAATTCCATAGTATTTTCTTCCTCTGCTGCCCAAACTAACAATAGTAATAAGCGTTCTAGTAGAACTGATAATGAGGACCCCGATCTTCTTCTACATTGCCTCACTGCCCTCGAAACTCAGTATAGTCTCCCGCAAACTTCTTTGGAAATGGACAAGCTTATGCATAATATTCCCCAAGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGTGGCTGTGCCACTCATCCCCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAATTGAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGTTATTCTGACATGCTGGATTTGGCCGTTCAACACATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGATCTTGAGAATTGCACTTGCGGATGCAAACAAAGTACATAA 999 0.4525 MYRPPSSSGSSSSSSSQQQQSSISQTGLTRYDSAPGSLLASTVDAVIGGGGSRLLPPGTGGGHHYFSGDSSQQQQQQHHQQQRSSNNAYDGFDGSALLRQKSSPAGFLNHLATLNHNNSAGFTITRGGNGGSRLKSELSFTGAGGGQECLSRISENGVDYATSAGNGSLHNNSTSSWGGPDNNNNNNSNSIVFSSSAAQTNNSNKRSSRTDNEDPDLLLHCLTALETQYSLPQTSLEMDKLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06427 332 MobiDBLite consensus disorder prediction 65 91 - -
Trre1g06427 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 326 - -
Trre1g06427 332 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g06427 332 FunFam Transcription factor bHLH130 family 261 330 - -
Trre1g06427 332 MobiDBLite consensus disorder prediction 50 94 - -
Trre1g06427 332 Gene3D - 261 330 IPR036638 GO:0046983
Trre1g06427 332 SMART finulus 266 316 IPR011598 GO:0046983
Trre1g06427 332 Pfam Helix-loop-helix DNA-binding domain 265 311 IPR011598 GO:0046983
Trre1g06427 332 MobiDBLite consensus disorder prediction 171 191 - -
Trre1g06427 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 324 IPR036638 GO:0046983
Trre1g06427 332 CDD bHLH_AtbHLH_like 265 317 IPR045239 -
Trre1g06427 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 310 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06427 Trre-Chr1 67229868 67231994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06427 27 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 44.199 4.00e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g06427 HLH 9.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06427 - - mtr:11440758 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06427 1 67229868 67231994 Trre1g06427 1 67229868 67231994 ECH
Trre13g03529 13 43090271 43092438 Trre1g06427 1 67229868 67231994 ECH
Trre1g02104 1 16779881 16783027 Trre1g06427 1 67229868 67231994 ECH