Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06423 ATGATGATTCTAAACTCTGAAATAAATGGGAGCTATGAAACATCATGTTCAACTGAAATAAATAATTTGGCAAAACGTGCGAGGTATGAAGCAGAGGATGATGATGCAGGAGGGTCTCAAAAGTTCAAAGGTATTGTTCCTCAACAAAACGGACATTGGGGTGCACAAATTTATGCAAACCACCAAAGAATATGGTTAGGGACATTCAAATCCGAAAGAGATGCTGCCATGGCTTATGACAGCGCCACCGTGAAGCTTAGAAGCGGAGAAAGCCATAGAAATTTTCCATGGAATGACCAAACAGTTCAAGAACCTTTGTTTCAAAGTCATTATAGCATGGAAACTATTTTGAGCATGATTAAGAATGGAACCTACCAATCTAAATTTGCCACTTTTCTTAGGAACCAAACACAAAGTGGCATTGTTGGGGTGAACAAGGGTGGTGGACAACAATTTTGTTGCACACAACTTTTTCAGAAAGAATTAACACCTAGTGATGTTGGTAAACTAAACAGGCTTGTCATCCCCAAAAAACATGCAGTTACCTATTTTCCTTTGGTTTGCAGTGACAATAATAATAATAATAATATAACTGCAAACGACGATAACTATTGCACCAGCGATGTGGAGCTTGTGTTTTACGACAAACTCATGCGATTGTGGAGGTTTCGATACTGTTATTGGAAGAGCAGTCAAAGCTACGTCTTCACCAGAGGATGGAATCGATTTGTGAAGGATAAGAAATTAAAGGCCAAAGACACCATTGTGTTTTATATGTGTGAACCTATAAATTTCACAAAAGGGGGTGATCATGGACAACCATTTACATTGATTGATGTAATATATAATAATGCTGGTCATGGAAAAAAACACTCATCTGAAGATCATAATAATAAGGGAGAAGATGCCAAACAGGTTTTGGAAAAAAGGTTAATTTCCAGTGAAGTGGATGGTGAAGAGACTCAAGGTAGAATAGATTTAAATGTATTTCATTCCACACATAATAATAATGCAGATACAGGATTCAAGCTCTTTGGCGTAAATATCAGCTGA 1053 0.3732 MMILNSEINGSYETSCSTEINNLAKRARYEAEDDDAGGSQKFKGIVPQQNGHWGAQIYANHQRIWLGTFKSERDAAMAYDSATVKLRSGESHRNFPWNDQTVQEPLFQSHYSMETILSMIKNGTYQSKFATFLRNQTQSGIVGVNKGGGQQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPLVCSDNNNNNNITANDDNYCTSDVELVFYDKLMRLWRFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYMCEPINFTKGGDHGQPFTLIDVIYNNAGHGKKHSSEDHNNKGEDAKQVLEKRLISSEVDGEETQGRIDLNVFHSTHNNNADTGFKLFGVNIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06423 350 Gene3D AP2/ERF domain 40 97 IPR036955 GO:0003700|GO:0006355
Trre1g06423 350 ProSiteProfiles B3 DNA-binding domain profile. 158 284 IPR003340 GO:0003677
Trre1g06423 350 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Trre1g06423 350 SMART rav1_2 41 102 IPR001471 GO:0003700|GO:0006355
Trre1g06423 350 ProSiteProfiles AP2/ERF domain profile. 41 96 IPR001471 GO:0003700|GO:0006355
Trre1g06423 350 Gene3D - 154 271 IPR015300 -
Trre1g06423 350 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Trre1g06423 350 CDD B3_DNA 157 259 IPR003340 GO:0003677
Trre1g06423 350 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Trre1g06423 350 SUPERFAMILY DNA-binding pseudobarrel domain 156 265 IPR015300 -
Trre1g06423 350 FunFam AP2 domain-containing protein RAP2.8 40 97 - -
Trre1g06423 350 SMART B3_2 158 270 IPR003340 GO:0003677
Trre1g06423 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 349 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06423 Trre-Chr1 67177962 67179014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06423 36 349 RAV Transcription Factor Family AT1G50680 50.000 9.28e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g06423 B3 6.8e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06423 K09287 - gmx:102660503 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06423 1 67177962 67179014 Trre1g06423 1 67177962 67179014 ECH