Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06422 ATGTCTCGCAAAGGCAACAACAACGACGAAATGGAAGAAGAAGCGTTTCGACGCGTGAAGAGAGAACGCCTCAACGCCAATGATAACGCACCGGAGGACCACCAAGATTCTTCCAGCCGCAGAATCATCCGTTCTGAGTTTCTCAAACTCAAGTCTCTCATCAACGAGAAAAAGGATGATTTGATGAACACAGATTCTGACAAGTTCGATTCAATCCTTCACGAGTTCGACAAATTACATGATCAAGTGAAGAGACCTCGAGAGCAGGTTGCTGACGCTGAAGCACTTCTCGATCTCACACGCACTTTACTTGGATCCGTTAAATCTCTTGCCAACGAAGGCGTTACTCCTTCTCAGTTTGTTTCTTCTCTTCTCAAACACTATGCTCACCCACCTAACACTTCAATTGACTGGCAAAAACTTGGCATTGCTGTTTCCCCCATTTTCCTCACGGTTCATGGCTCTTCTACCATGCTTGGTCCAATGGAAAATCAGTTGAAACAACGCAAAGCAATCGTCTCTAGAAAGCGAGCTCCTCGTGCAACTACAACTGCTAGGCCTGAACAGCTGGATGATGCTGTTGGAGGGGGAAAAACGGATACTGACAAAAACATGTCAACCATGTTTAACATATTAAGGGAAAAGAAAAGGGTCCTGCTTGAACACCTCATTTTGAACAGAATTTCATTTGCTCAGACAGTGGAAAACTTGTTTGCTCTCTCATTTTTAGTGAAAGATGGCCGTGCGGAGATCATTATGGATAAAAACCGTTTGCATTATGTTTCACCAAAAAATGCTCCGGCTGCCAACGCTGTAATGTCAAAAGAAGTTTCTTACACTCATTTTGTCTTCAGATATGATTTCAATGACTGGAAGATAATGAAGGATATTGTGGCTGAAGGCGAAGAGTTAATGCCACAAAGGATTCAATACAGCAATGTGGTTGACTCACAGGCAGACATGAGTGGTGACGATTCCCAATCAGCTCTGCCTGTAACTCCGATCAGAAAGATATCTCGGAACCGAGGACGGGTTCTGCAAGAGGAAAATATTGTGGAAGAATCGCCTGAAGGCAAAGGTGAAAATGCTTCCAGAGCTGCTGCAATCCGAAGGTGTAAGCGTAAACTTCCTTAA 1134 0.44 MSRKGNNNDEMEEEAFRRVKRERLNANDNAPEDHQDSSSRRIIRSEFLKLKSLINEKKDDLMNTDSDKFDSILHEFDKLHDQVKRPREQVADAEALLDLTRTLLGSVKSLANEGVTPSQFVSSLLKHYAHPPNTSIDWQKLGIAVSPIFLTVHGSSTMLGPMENQLKQRKAIVSRKRAPRATTTARPEQLDDAVGGGKTDTDKNMSTMFNILREKKRVLLEHLILNRISFAQTVENLFALSFLVKDGRAEIIMDKNRLHYVSPKNAPAANAVMSKEVSYTHFVFRYDFNDWKIMKDIVAEGEELMPQRIQYSNVVDSQADMSGDDSQSALPVTPIRKISRNRGRVLQEENIVEESPEGKGENASRAAAIRRCKRKLP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06422 377 MobiDBLite consensus disorder prediction 349 377 - -
Trre1g06422 377 MobiDBLite consensus disorder prediction 349 368 - -
Trre1g06422 377 MobiDBLite consensus disorder prediction 172 199 - -
Trre1g06422 377 MobiDBLite consensus disorder prediction 1 39 - -
Trre1g06422 377 PANTHER UNCHARACTERIZED 8 359 IPR027786 GO:0005634|GO:0006281|GO:0030915
Trre1g06422 377 Pfam Nse4 C-terminal 220 304 IPR014854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06422 Trre-Chr1 67174361 67176296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06422 38 376 Non-SMC Element family AT1G51130 51.714 1.31e-118 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06422 K22825 - gmx:100792117 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06422 1 67174361 67176296 Trre1g06422 1 67174361 67176296 ECH