Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06421 ATGGAATATTACGGGGTTGTGAGTTTGGTATTAGCCGTTTTGGTATGGATTTGGTTGGCAATAGTGATGGAACATAAAAGATCGAAACTTGGTCATCAACTTCCACCTGGACCAAGATGTTGGCCAGTGGTTGGCAACATTTTCCAGATAGGTTTGTCACCTCCACACGAGTCCTTTACAATACTTGCTCATAAGCATGGTCCTATCATGACCCTTTGGCTAGGTTCCATGTGCACCGTCGTTGTCTCCTCAAGTGATGTAGCCTGTGACATGTTCAAAAACAACGATGTTGCTCTTGCTGGAAGGAAGATTTATGAAGCCATGAAAGGGAATCATGAGTATGGTAGTGAAGGTTCGCTCATAACTTCTCAATACAACGCACACTGGCGCATGCTGAAGCGCTTGAGCACCACCGAGTTCTTTGTCACAAGTCGCTTAGATGCTATGCGAGATGTGCGTGCAAAATGCATAGACCGTATGGTTCACTTGATAGATGAAGTTGCTTGTGAGTCTGGGAATGGTGTTGTTGATGTTGGCAGGTTCTTTTTCTTGATGGCTTTTAATCTCATCGGGAACCTTATATTCTCAAAGGACTTGTTAGACCCTGAAATGGAGAGAGGGGCTAGATTCTATCATCATACGGTTAAGGTTATGGAATATGCTGGGAAACCCAACGTTGCAGATTTCTTTCCTATATTGAAGAGGTTTGACCCTCAAAGTATAAGAAGAAACACACAGTTCCACGTTGAAAGAGCCTTTGAGATAGCAGGTTGGTTCATCAAACAAAGGATGGAAAATGATATGGTTGGCGGTGGAAATGGAAACAACAAAGACTTTTTGGATGTACTCTTGCAATTTCGCGGCGACAGTGTCGGTGGGCCCTATAGTTTTACTTCGAGAACTATTAACGTTGTTGTCTTTGAAATGTTCACTGCGGGGACAGACACGACAACAAGCACACTAGAATGGGTGATGGCGGAACTTCTACACAACCCAAGAACGCTAAAGAAAGTGCAAATGGAATTGAGGAACAAAATAGGTGCGGATAGGAAATTTGAAGAAAATGACATAGAAAATCTTCCCTACCTCAAAGCAGTTATCAAGGAGACGCTGAGACTTCACCCGCCTCTTCCTTTTTTGGTTCCTCACATGGCCTTGGACTCTTGCAAGATTGGAGACTACTACATTCCCAAAGAAACACAAATTTTAGTGAATGTTTGGGCAATTGGGAGGGACCCAAAAGTGTGGGATGCTCCTTTATTGTTCTGGCCAGAAAGGTTTATGGAGCCAAACATGGTAGATTACAAGGGACGCCATTTTGAGTTTATACCTTTTGGTTCAGGCCGAAGAATGTGCCCAGCAATGCCTCTTGCCTCACGTGTGCTTCCACTGGCACTAGGCTCCCTCCTCAGCTACTTTGATTGGATTTTGCCCAATGGCCTGAAGCCAGAGGATATGGACATGACAGAGGGAATGGGAATAACATTGAGAAAAGCTGTCCCTTTGAAAGCCATACCTGTGCCTTACAAAGGAACTCCAGTTGATGTTGCAGGGAAAAAATAA 1563 0.4402 MEYYGVVSLVLAVLVWIWLAIVMEHKRSKLGHQLPPGPRCWPVVGNIFQIGLSPPHESFTILAHKHGPIMTLWLGSMCTVVVSSSDVACDMFKNNDVALAGRKIYEAMKGNHEYGSEGSLITSQYNAHWRMLKRLSTTEFFVTSRLDAMRDVRAKCIDRMVHLIDEVACESGNGVVDVGRFFFLMAFNLIGNLIFSKDLLDPEMERGARFYHHTVKVMEYAGKPNVADFFPILKRFDPQSIRRNTQFHVERAFEIAGWFIKQRMENDMVGGGNGNNKDFLDVLLQFRGDSVGGPYSFTSRTINVVVFEMFTAGTDTTTSTLEWVMAELLHNPRTLKKVQMELRNKIGADRKFEENDIENLPYLKAVIKETLRLHPPLPFLVPHMALDSCKIGDYYIPKETQILVNVWAIGRDPKVWDAPLLFWPERFMEPNMVDYKGRHFEFIPFGSGRRMCPAMPLASRVLPLALGSLLSYFDWILPNGLKPEDMDMTEGMGITLRKAVPLKAIPVPYKGTPVDVAGKK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06421 520 Pfam Cytochrome P450 35 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 FunFam Cytochrome P450 76C4 26 505 - -
Trre1g06421 520 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trre1g06421 520 SUPERFAMILY Cytochrome P450 35 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 Gene3D Cytochrome P450 27 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06421 520 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 508 - -
Trre1g06421 520 CDD CYP76-like 63 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06421 Trre-Chr1 67171632 67173402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06421 6 512 Cytochrome P450 AT3G52970 61.714 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06421 - - tpra:123898388 1001.89