Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06407 ATGGACCACCGCAGAGACCTTCACCATCGTCCTGCTCATTTGGCACATGCTGCTACTCCTGATTACTTTGTCTCTACTTACAAAGACGATTTATATTTGAGGAAGAGAACAAGGATGCGTCGTTGGCTATGCTGCACTTGTCAGGTGGAGGAGTCTTATCCATCAAATGAAAACGAACACCTGAAAAGCCCAAGGAGTTTTGGAGAAGGCAACCAAAAAGGCTCAAGGGGGTCAGCTCCTGTCAAACCGGAAGCACAAAAGGCACCACCTCCTATCGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAAAAAACTGACAACTTTGGGTCAAAGGCATTGATTGGTGAAGGGTCGTATGGGAGAGTGTATTATGCAACATTAAACAATGGGAAAGCTGTGGCTGTGAAAAAGCTTGATGTTTCTTCTGAACCCGAATCAAATAACGAGTTTCTTACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGAAAATTTTGTTGAGTTGCATGGATACTGCGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCGACTATGGGCTCTCTTCATGACATTTTGCACGGAAGAAAGGGAGTTCAAGGGGCACAACCTGGGCCAACTCTTAACTGGATGCAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTAGAGTATTTGCACGAGAAAGTTCAACCATCAATTATACACAGGGATATCAGGTCAAGCAATGTGCTTATCTTTGAAGATTACAGAGCTAAGATAGCTGATTTTAACCTCTCTAATCAGGCCCCTGACATGGCTGCACGTCTTCATTCTACTCGTGTACTGGGAACTTTTGGGTATCATGCTCCAGAATATGCCATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTACAGTTTTGGCGTTGTTCTTCTTGAACTTCTTACAGGTAGGAAACCCGTTGATCATACCATGCCTCGAGGACAGCAAAGTCTTGTCACATGGGCTACCCCAAGATTAAGTGAAGATAAAGTGAAACAATGCGTGGACCCAAAACTGAAAGGAGAATATCCCCCAAAAGGAGTTGCTAAGCTTGCAGCTGTAGCAGCACTGTGTGTGCAGTATGAAGCTGAGTTTAGGCCTAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTCAAGGCTCCCGCACCTGCACCAGAAACTTGA 1203 0.4447 MDHRRDLHHRPAHLAHAATPDYFVSTYKDDLYLRKRTRMRRWLCCTCQVEESYPSNENEHLKSPRSFGEGNQKGSRGSAPVKPEAQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEPESNNEFLTQVSMVSRLKNENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLNWMQRVRIAVDAARGLEYLHEKVQPSIIHRDIRSSNVLIFEDYRAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAPAPAPET 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06407 400 ProSitePatterns Tyrosine protein kinases specific active-site signature. 237 249 IPR008266 GO:0004672|GO:0006468
Trre1g06407 400 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 42 395 - -
Trre1g06407 400 SMART tyrkin_6 109 387 IPR020635 GO:0004713|GO:0006468
Trre1g06407 400 MobiDBLite consensus disorder prediction 54 92 - -
Trre1g06407 400 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Trre1g06407 400 FunFam PTI1-like tyrosine-protein kinase 3 187 397 - -
Trre1g06407 400 SUPERFAMILY Protein kinase-like (PK-like) 89 387 IPR011009 -
Trre1g06407 400 ProSiteProfiles Protein kinase domain profile. 109 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06407 400 Gene3D Phosphorylase Kinase; domain 1 80 185 - -
Trre1g06407 400 Pfam Protein tyrosine and serine/threonine kinase 114 387 IPR001245 GO:0004672|GO:0006468
Trre1g06407 400 Gene3D Transferase(Phosphotransferase) domain 1 187 395 - -
Trre1g06407 400 FunFam PTI1-like tyrosine-protein kinase 3 71 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06407 Trre-Chr1 67105398 67108703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06407 43 388 Receptor kinase-like Gene Family AT4G02010 46.132 4.50e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trre1g06407 PK_Tyr_Ser-Thr 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06407 K13436 - mof:131150424 667.151