Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06390 ATGGTATCGGCTACAATTAGGCGAATTGTGTCACCCTGTTGGAGGCCATCTATTGTGGGCGAAAATTCTAGTAGGTATGGCGATGCAAGTGGACGTTCCGATGGTTTGTTGTGGTATAAAGATTCCGGAAGACACGCGAATGGTGAATTCTCAATGGCTGTTGTTCAAGCAAATAATTTGTTGGAGGATCATAGTCAAGTTGAATCAGGACCCATTAGCTTGATTGAAGGAAGTCCTCGAGGTACTTTTGTTGGTGTGTATGATGGCCATGGAGGTCCAGAAACTGCCCGGTTTGTCAATGAACGCCTATTTAAACATCTCAAGAAGTTCACTTCAGAAAATCAGGGAATGTCGGCAGATGTTATCACGAAAGCATTTTTGGCAACAGAAGAAGAATTTCTTGCTCTGGTAAAGAAGCAATGGCAACACAAACCACAGCTAGCGTCGGTTGGATCTTGCTGTTTGGTAGGCGTAATATATAATGGAGAGCTCTATACTGCAAATGCAGGAGACTCTCGAGCAGTGTTGGGTAGACTGGACGAGGCTACAAAAGAGATTAAAGCGGTTCAACTATCCTATGAGCACAATGCTAGCCTAGAATCTGTCAGAGAGGAGCTACGCTCATTGCATCCCGATGATCCACAGATCGTACTGATGAAGCACACGGTCTGGCGCGTGAAGGGTCTCATTCAGATTTCAAGATCCATTGGCGACGCTTATCTAAAAAGGAAAGAGTTTAACCAAGCACCACTGTTGTCAAAGTTTCGGCTTCCAGAACCCTTTGAGACACCAATCCTTAAAGCTGAACCAACAGTACAAGTACAGAAACTACAACCTAGTGATCAATTTCTTATATTTGCATCAGATGGATTATGGGAGCATTTGAGCAATCAAGAAGTCGTTGACATTGTCCAAAGCAGTCCACGCAATGGAGTAGCAAAGAAACTGATCAAAACAGCACTTTGTGAAGCCGCAAAGAAAAGAGAAATGAGATACTCAGACTTGAAAAAGATTGATCGTGGGGTACGGAGACATTTCCATGATGACATCACGGTTATAGTTTTGTATCTGGATTCACATAATCCACGTGCTCCCGTCGTTTCAGTTAAAGGAGGTGGTGATTTTGGTATCGGTATTGTAAATGGCTAG 1149 0.4343 MVSATIRRIVSPCWRPSIVGENSSRYGDASGRSDGLLWYKDSGRHANGEFSMAVVQANNLLEDHSQVESGPISLIEGSPRGTFVGVYDGHGGPETARFVNERLFKHLKKFTSENQGMSADVITKAFLATEEEFLALVKKQWQHKPQLASVGSCCLVGVIYNGELYTANAGDSRAVLGRLDEATKEIKAVQLSYEHNASLESVREELRSLHPDDPQIVLMKHTVWRVKGLIQISRSIGDAYLKRKEFNQAPLLSKFRLPEPFETPILKAEPTVQVQKLQPSDQFLIFASDGLWEHLSNQEVVDIVQSSPRNGVAKKLIKTALCEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVLYLDSHNPRAPVVSVKGGGDFGIGIVNG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06390 382 CDD PP2Cc 50 357 IPR001932 -
Trre1g06390 382 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Trre1g06390 382 ProSiteProfiles PPM-type phosphatase domain profile. 49 357 IPR001932 -
Trre1g06390 382 Gene3D - 38 363 IPR036457 -
Trre1g06390 382 Pfam Protein phosphatase 2C 76 327 IPR001932 -
Trre1g06390 382 SUPERFAMILY PP2C-like 61 359 IPR036457 -
Trre1g06390 382 SMART PP2C_SIG_2 62 357 IPR001932 -
Trre1g06390 382 SMART PP2C_4 41 355 IPR001932 -
Trre1g06390 382 FunFam Phosphatase 2C family protein 38 365 - -
Trre1g06390 382 PANTHER PROTEIN PHOSPHATASE 40 355 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06390 Trre-Chr1 66948931 66951237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06390 3 376 PP2C-type Phosphatase Gene Family AT3G12620 73.158 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06390 K01102 - gmx:100807559 612.068