Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06387 ATGCCTCAGCTTCGTAGTGGAGTCCGGCGTCGTCGTGCTGCTGCGCCTGTAACAACCAACAAACAATCGGAACAACCGCCACCTAAGAAAAACGTGGCAGCAAGAGGTAGACCAAGAACTAGATTGGCTGCCAAGAAAAAATCGGAGCCGTTGATTGAGATATTAGAACCTGATACTTTAGTTGAACCTCCTAAAGAGAACGTTGTTGTTGTTATTGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTGGTGTTATGGGTGATGAAAGAGTTGGTGTTAGTGGTAATAAGGATAAAGGTGTTGCTGGTGGTGTTCCTGATGAGGATGTCAACTCTCCACCTCTTCCAGAAAGGGTTCAAGTAGGAGGATCGCCTCTCTACAAGGTAGAAAGGAAACTTGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGTCGTGAGCGTGCAAATGCTCCCGGAGCTTTGGAAGTTGCTCTGAAATTTGAACATAGAAACAGTAAAGGTTGCAATTATGGCCCTCCTTATGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGATTATTATGTGATGGTTATGGACATTCTTGGTCCAAGTTTGTGGGATGTGTGGAATACCTCAGGACAGTCGATGTCTCCTGAAATGGTCTCATGTATAGCTGTTGAGTCGTTATCCATACTTGAGAAGTTGCACGCTAAAGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAACCCAGCACAGCACAGGAGAAGAAATTGTTTCTTGTTGACCTTGGTTTAGCAACAAAGTGGAAAGATTCGTCAAATGGAAAGCATACTGAATACGATCAACGCCCTGACATGTTTAGAGGGACTGTTCGATACGCTAGCGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCACTTGCATACACACTAATCTTTCTTCACAGGGGCCGATTGCCATGGCAAGGTTTTCAGGGTGATGGCAAATCGTTCCTCGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGCTATGCTGCTTTTGCCCTGCACCTTTTAAGCAATTTCTCGAGACTGTGGTGAACATGAAGTTTGATGAAGAACCTAACTACTCTAAGCTAATATCCTTGTTTGATGGTATGCTCGGACCTAATCCTGCATTGCGACCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAACGTTGATGCAGATGATGAACAGCCCAAAAAGAAGGTCCGTTCAGGGATTCCTGCTTCTCAATGGATTTCAGTTTACAATGCTAGACAACCGATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGATTAGCACAGCATATTGAGAGAGGGATTGCAGATGACCTTCTTATTAGTTGTGTATCATGTTGTTCCAATCTATGGGCACTTATCATGGATGCTGGAACTAATTATACCGCTCAAGTTTACAAATTATCACCATTATTTTTACACAAGGAATGGATCTTGGAACAATGGGATAAGAACTTCTACATTACTTCTATTGCAGGAGCCAACAATGGCAGCTCTGTTGTTGTGATGTCAAAAGGTACGCGGTACACTCAACAATCATACAAAGTAAGCGAATCTTTCCCCTACAAATGGATCAACAAGAAGTGGAAAGAAGGTTTTCACGTCACCTCAATGGGTACTGCTGGAAATCGCTGGGGTATTGTCATGTCTCGCAATGCTGGATTCAGTGATCAGGTGGTGGAACTCGATTTTCTCTATCCAAGTGAAGGCATCCATAAACGTTGGGATAATGGTTATAGGATTACAGCAACTGCAGCTACATTGGATCAATCTGCGCTTATATTAAGTATCCCTAGGAACAGACCCGGAGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGCGCTCATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCCCATTTGTGCTATGGGCGCACAGTTTGCTGA 2049 0.43 MPQLRSGVRRRRAAAPVTTNKQSEQPPPKKNVAARGRPRTRLAAKKKSEPLIEILEPDTLVEPPKENVVVVIEEEEEEEEGVGVMGDERVGVSGNKDKGVAGGVPDEDVNSPPLPERVQVGGSPLYKVERKLGKGGFGQVFVGRRERANAPGALEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGDYYVMVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPSTAQEKKLFLVDLGLATKWKDSSNGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSPEMLCCFCPAPFKQFLETVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNVDADDEQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADARLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYTAQVYKLSPLFLHKEWILEQWDKNFYITSIAGANNGSSVVVMSKGTRYTQQSYKVSESFPYKWINKKWKEGFHVTSMGTAGNRWGIVMSRNAGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATLDQSALILSIPRNRPGDETQETLRTSQFPSAHVKEKWSKNLYLAHLCYGRTVC 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06387 682 Gene3D Transferase(Phosphotransferase) domain 1 112 441 - -
Trre1g06387 682 SUPERFAMILY Protein kinase-like (PK-like) 126 404 IPR011009 -
Trre1g06387 682 CDD STKc_CK1 126 396 - -
Trre1g06387 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Trre1g06387 682 ProSiteProfiles Protein kinase domain profile. 126 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06387 682 MobiDBLite consensus disorder prediction 74 120 - -
Trre1g06387 682 FunFam casein kinase 1-like protein HD16 97 438 - -
Trre1g06387 682 Pfam Protein kinase domain 126 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06387 682 SMART serkin_6 126 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06387 682 MobiDBLite consensus disorder prediction 1 50 - -
Trre1g06387 682 PANTHER CASEIN KINASE-RELATED 126 644 - -
Trre1g06387 682 ProSitePatterns Protein kinases ATP-binding region signature. 132 159 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06387 Trre-Chr1 66929139 66933738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06387 125 279 EF-hand Containing Proteins AT4G21940 27.848 1.52e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trre1g06387 Pkinase 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06387 - - gmx:100819969 1108.59