Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06386 ATGAAAGAGACAGCTTTGAGCTATGGAGAATATCCTCCTCCTATGGCAACATATGAAGAGGTTGTAGACAATCCCAAGCTCTTCATGCTTAGCTTGGAGAAGCTTCATGCTCTAATGTGCACCAAGTTTATGATTCCTATTATTGGTGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATAAAAGATAGAAAATGGAAAGAAATAACACTAGTTTTCAATTTTCCATCAACGGCTACTAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTAACTGGACACATACAACTTCTGATGTTTTGCAGAGTCAATCATCCATCCCAGTTCCTGCTCCAAAGATGCAGATTTTGCATCCTTCACCTCAAATTCAACCAGCTGTCTTTCAACAGCTAAATGTCAATGCTGCTAGACTGCCTCAAGCAATGGCATCATCTTCGGCAGGGTCATCGGTTGTCGGGGTCATTGATGGGAAATTTGACAGTGGTTATCTGGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTCCTTTATCAAGCACCACAAAATGCCGTGTTGCCAACATCCCACCACAGTGCTTCTGCTAATAACAACAATGTGACTGCCTCGGTTGGTGTCCATCGTCGCCGACGCAGGAAAAAGTCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAGCCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAGCATGCAAGGCTAAAACCTCTTAACCAAGGGAGGGACAGAGAGATCAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAACGACTCCGAAAAAGCAGTGTATCAAGATAAAGCTGTGAAGGACAAGGAAAGGTACAGAACAGAAATGGAGTATTACCGGGAGAAGTTGAAGATGGATCAGGTGATCAGTGATGCCGTGCCACTTCAACAGAGACTTCCTGAACCAGATACGGACATGTTGAACGCTGAGGTGGATTCTCTTCAAACACCGGAGGAGAGCAGTTCGGGTGGAAGTGATGACTATGAAGATGACAAGGCAATGGAGAAAGATTATAGTATGGATGCATTGCCTGTTATAGGAGTTGGTGCTGAATGCATGGATTCAGTAGAAAAATCATCCAAGGGGGGTTTATGA 1212 0.4299 MKETALSYGEYPPPMATYEEVVDNPKLFMLSLEKLHALMCTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKDRKWKEITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARNWTHTTSDVLQSQSSIPVPAPKMQILHPSPQIQPAVFQQLNVNAARLPQAMASSSAGSSVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNAVLPTSHHSASANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGRDREISRTIGELWNKLNDSEKAVYQDKAVKDKERYRTEMEYYREKLKMDQVISDAVPLQQRLPEPDTDMLNAEVDSLQTPEESSSGGSDDYEDDKAMEKDYSMDALPVIGVGAECMDSVEKSSKGGL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06386 403 Gene3D High mobility group box domain 236 331 IPR036910 -
Trre1g06386 403 CDD HMG-box_AtHMGB9-like 252 318 - -
Trre1g06386 403 FunFam High mobility group B protein 15 234 329 - -
Trre1g06386 403 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 252 319 IPR009071 -
Trre1g06386 403 Pfam ARID/BRIGHT DNA binding domain 26 109 IPR001606 GO:0003677
Trre1g06386 403 ProSiteProfiles ARID domain profile. 22 113 IPR001606 GO:0003677
Trre1g06386 403 SMART bright_3 23 114 IPR001606 GO:0003677
Trre1g06386 403 MobiDBLite consensus disorder prediction 230 259 - -
Trre1g06386 403 CDD ARID_HMGB9-like 24 109 IPR045303 GO:0003677
Trre1g06386 403 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 369 - -
Trre1g06386 403 SUPERFAMILY HMG-box 240 323 IPR036910 -
Trre1g06386 403 Pfam HMG (high mobility group) box 252 319 IPR009071 -
Trre1g06386 403 SMART hmgende2 251 320 IPR009071 -
Trre1g06386 403 SMART ARID_2 19 109 - -
Trre1g06386 403 MobiDBLite consensus disorder prediction 232 246 - -
Trre1g06386 403 FunFam High mobility group B protein 15 16 130 - -
Trre1g06386 403 MobiDBLite consensus disorder prediction 349 375 - -
Trre1g06386 403 SUPERFAMILY ARID-like 21 119 IPR036431 GO:0003677
Trre1g06386 403 Gene3D - 16 128 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06386 Trre-Chr1 66912788 66915336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06386 14 350 ARID Transcription Factor Family AT1G04880 62.069 5.86e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre1g06386 ARID 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06386 - - gmx:100807028 578.556