Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06385 ATGGCTTCAACATCGTGTGTTACTAAGAGTCCACTACCCATGAAAGAGACAGCTTTGAGCTATGGAGAATATCCTCCTCCTATGGCAACATATGAAGAGGTTGTAGACAATCCCAAGCTCTTCATGCTTAGCTTGGAGAAGCTTCATGCTCTAATGTGCACCAAGTTTATGATTCCTATTATTGGTGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATAAAAGATAGAAAATGGAAAGAAATAACACTAGTTTTCAATTTTCCATCAACGGCTACTAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTAACTGGACACATACAACTTCTGATGTTTTGCAGAGTCAATCATCCATCCCAGTTCCTGCTCCAAAGATGCAGATTTTGCATCCTTCACCTCAAATTCAACCAGCTGTCTTTCAACAGCTAAATGTCAATGCTGCTAGACTGCCTCAAGCAATGGCATCATCTTCGGCAGGGTCATCGGTTGTCGGGGTCATTGATGGGAAATTTGACAGTGGTTATCTGGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTCCTTTATCAAGCACCACAAAATGCCGTGTTGCCAACATCCCACCACAGTGCTTCTGCTAATAACAACAATGTGACTGCCTCGGTTGGTGTCCATCGTCGCCGACGCAGGAAAAAGTCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAGCCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAGCATGCAAGGCTAAAACCTCTTAACCAAGGGAGGGACAGAGAGATCAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAACGACTCCGAAAAAGCAGTGTATCAAGATAAAGCTGTGAAGGACAAGGAAAGGTACAGAACAGAAATGGAGTATTACCGGGAGAAGTTGAAGATGGATCAGGTGATCAGTGATGCCGTGCCACTTCAACAGAGACTTCCTGAACCAGATACGGACATGTTGAACGCTGAGGTGGATTCTCTTCAAACACCGGAGGAGAGCAGTTCGGGTGGAAGTGATGACTATGAAGATGACAAGGCAATGGAGAAAGATTATAGTATGGATGCATTGCCTGTTATAGGAGTTGGTGCTGAATGCATGGATTCAGTAGAAAAATCATCCAAGGGGGGTTTATGA 1251 0.4309 MASTSCVTKSPLPMKETALSYGEYPPPMATYEEVVDNPKLFMLSLEKLHALMCTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKDRKWKEITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARNWTHTTSDVLQSQSSIPVPAPKMQILHPSPQIQPAVFQQLNVNAARLPQAMASSSAGSSVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNAVLPTSHHSASANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGRDREISRTIGELWNKLNDSEKAVYQDKAVKDKERYRTEMEYYREKLKMDQVISDAVPLQQRLPEPDTDMLNAEVDSLQTPEESSSGGSDDYEDDKAMEKDYSMDALPVIGVGAECMDSVEKSSKGGL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06385 416 FunFam High mobility group B protein 15 247 342 - -
Trre1g06385 416 CDD HMG-box_AtHMGB9-like 265 331 - -
Trre1g06385 416 MobiDBLite consensus disorder prediction 243 272 - -
Trre1g06385 416 FunFam High mobility group B protein 15 29 143 - -
Trre1g06385 416 MobiDBLite consensus disorder prediction 245 259 - -
Trre1g06385 416 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 382 - -
Trre1g06385 416 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Trre1g06385 416 SMART hmgende2 264 333 IPR009071 -
Trre1g06385 416 SMART ARID_2 32 122 - -
Trre1g06385 416 Gene3D High mobility group box domain 249 344 IPR036910 -
Trre1g06385 416 SMART bright_3 36 127 IPR001606 GO:0003677
Trre1g06385 416 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Trre1g06385 416 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Trre1g06385 416 SUPERFAMILY HMG-box 253 336 IPR036910 -
Trre1g06385 416 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Trre1g06385 416 SUPERFAMILY ARID-like 34 132 IPR036431 GO:0003677
Trre1g06385 416 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Trre1g06385 416 Gene3D - 29 141 IPR036431 GO:0003677
Trre1g06385 416 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06385 Trre-Chr1 66912788 66915375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06385 1 363 ARID Transcription Factor Family AT1G04880 59.626 2.60e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre1g06385 ARID 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06385 - - gmx:100807028 592.423