Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06363 ATGTCATTCGGGGGAGGTCACCGCGTTGCAACCCTCCGTCGTTGGATGCTGCATACCGTTTTCAACTTCTCCTCCTTCCCCAACGTTTCTTCTCACTCCTCCCTCCTTCACAATTTTTTGCCATGGTTGGAGAACAAAGCTGCTTCCACCATTTCTTCTTCCCTTTCCATTGCAAATTCTTCTTACGGAAACTCCTTGTTTGCTTCTAACTCAATTCAAACCGGTGATTGCATTTTACAAGTTCCTTACACTGTGCAAATAACTCCGGATAATCTCCCTCCTCAAATCAGATCTTTGATCAGTGAAGATGTTGGTAATATTGCAAAACTCGCTATTGTTCTTCTAATTCACAAGAATTTGGGTCAGGACTCTGAATGGTATCCTTATATCAGCTGTCTTCCCCCGCAAGCGCAGATGCATAATACGATATTTTGGAATGAAAGTGAGTTGGAGATGATTCGTCAAAGTTCTGTTTATCAGGAAACTATTTATCAAAAGTCTCAAATCGAAAAGGACTATTTGGCAATCAGGCCTGTTTTGGAATCATTTGGTCAAAGTTCTGGAGATTTTACCTGTGAGGAATTCATGCACACATGCACACAAGTTGGCTCTAGAGCATGGGGAAGCACAAAGGGTTTATCTCTGATTCCATTTGCGGATTTCTTAAATCATGATGGGATTTCAGAAGCAATTGTAATGAGTGACGACACCAAGCAATGCTCAGAAGTTATCGCTGACCGCGATTATGTTCCTGGTGAACAGGTACTTATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCTTACAACATTTATGATCAGGTTCAGATCCAGTGTGATATACCTAAGCAAGATCCTCTGCGTGACATGAAATTAGAACTTTTGCACCAATACTCTGTGCCTCCAACCAAAGAGGCGAAGGGCTTGAAGTATTCTGTGAATTCCTTCACAATCAAGGAGGTGAAGTCTGCTAGAGGGAAAGGGAAGGGTGTGCCACAATCACTTCGTGCACTTGCTCGTGTTCTTTCTTGTACCACGCCTCAGGAGCTTAACTATCTGGTCATGGAGGCTGCACAAACTGATGGTAGGCTGGCTAGGCGGCCTTTACAGGATATGAACAAAGAGATACAAGCACACAGGATATTATCCTCATTATTCATCCAATTAATTGAGGAGCGCAATGCAACTATTATGTCATTAGATTCTTGCGATTCTTCATCCTTGTGCGAGAGACTTCCTGTTAGAAGACAAATGGCTCAAGATCTCCTACACGGGGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTTGAGAACTACTGTTTTTCCATGATTTGA 1362 0.4236 MSFGGGHRVATLRRWMLHTVFNFSSFPNVSSHSSLLHNFLPWLENKAASTISSSLSIANSSYGNSLFASNSIQTGDCILQVPYTVQITPDNLPPQIRSLISEDVGNIAKLAIVLLIHKNLGQDSEWYPYISCLPPQAQMHNTIFWNESELEMIRQSSVYQETIYQKSQIEKDYLAIRPVLESFGQSSGDFTCEEFMHTCTQVGSRAWGSTKGLSLIPFADFLNHDGISEAIVMSDDTKQCSEVIADRDYVPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQCDIPKQDPLRDMKLELLHQYSVPPTKEAKGLKYSVNSFTIKEVKSARGKGKGVPQSLRALARVLSCTTPQELNYLVMEAAQTDGRLARRPLQDMNKEIQAHRILSSLFIQLIEERNATIMSLDSCDSSSLCERLPVRRQMAQDLLHGELRILKSASAWLENYCFSMI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06363 453 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 285 448 IPR036464 -
Trre1g06363 453 Gene3D set domain protein methyltransferase, domain 1 33 273 - -
Trre1g06363 453 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 35 403 - -
Trre1g06363 453 SUPERFAMILY SET domain 37 278 IPR046341 -
Trre1g06363 453 FunFam Predicted protein 276 451 - -
Trre1g06363 453 Gene3D - 276 448 IPR036464 -
Trre1g06363 453 Pfam Rubisco LSMT substrate-binding 290 438 IPR015353 -
Trre1g06363 453 Pfam SET domain 65 260 IPR001214 GO:0005515
Trre1g06363 453 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 32 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06363 Trre-Chr1 66803419 66809731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06363 33 231 NAC Transcription Factor Family AT3G56570 21.845 2.06e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g06363 SET 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06363 K19199 - gmx:100818002 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06363 1 66803419 66809731 Trre1g06363 1 66803419 66809731 ECH