Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06362 ATGAGAACGGACTTCGAGACAACGGAGGGCATAAAGACGATTACAACTTTCGAGGAGATGGGATTCAAACACGATTTACTCCGTGGAATCTACCAATTCGGTTTCGATAAACCATCACCGATTCAACAGCGTGCTGTTGTGCCTATCATTCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGTACTGGCAAGACATCCATGATTGCTCTAACTGTTTGTCAGCTTGTCGATACCTCCGTCAGAGAGGTGCAGGCTTTAATTGTTTCTCCGACGAGGGAACTGGCCTCTCAAACTGAAAGAATTATACGGGCTATTGGGGATTTTGTAAATATACAAGCACATGCTTGCATTGGAGGTAAAAGTGTGGGAGAAGATATAAGGAAACTTGAACATGGAGTTCATGTGGTGTCTGGAACTCCTGGTCGAGTATGTGACATGATCAAGAGGAGAACATTGCGCACAAAAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGTTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTGCCTCGTGATATTTTAGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTATAAAACGTGATGAATTGACGTTAGAGAGCATCAAGCAATATTTTGTTTCGGTTGAAAGAGAGGAATGGAAGTTTGATACTTTGTGCGATCTTTATGATAATTGCATCATCACTCAAGCTGTTGTATTCTGTAACACCAAGCGAAAGGTGGATTGGTTAACTGAAAAATTGCAGAGAAGAGATGCAATTATGGGAGAATTTTGTGCTGGAACAACCCGAGTATTGATAACAACTGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTTTAGTTATTAACTACGACCTTCCAAATAACCGAGAGTTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGTACTGCAATAAATTTTGTGAAAAGCGACGATATCAAGATCCTGAGAGATATTGAACAATATTATGGTACTCAGATTGATGATCTGCCAATGAATGTTGCTGATCTTATATAA 1119 0.412 MRTDFETTEGIKTITTFEEMGFKHDLLRGIYQFGFDKPSPIQQRAVVPIIQGRDVIAQAQSGTGKTSMIALTVCQLVDTSVREVQALIVSPTRELASQTERIIRAIGDFVNIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTKAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPRDILEMTNKFMTDPVRILIKRDELTLESIKQYFVSVEREEWKFDTLCDLYDNCIITQAVVFCNTKRKVDWLTEKLQRRDAIMGEFCAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGTAINFVKSDDIKILRDIEQYYGTQIDDLPMNVADLI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06362 372 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 13 353 - -
Trre1g06362 372 SMART helicmild6 254 333 IPR001650 -
Trre1g06362 372 Coils Coil 371 372 - -
Trre1g06362 372 FunFam Eukaryotic initiation factor 4A-III 222 372 - -
Trre1g06362 372 FunFam ATP-dependent RNA helicase DBP5 2 221 - -
Trre1g06362 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 348 IPR027417 -
Trre1g06362 372 Pfam Helicase conserved C-terminal domain 245 333 IPR001650 -
Trre1g06362 372 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 227 372 IPR001650 -
Trre1g06362 372 CDD DEADc_EIF4AIII_DDX48 17 217 - -
Trre1g06362 372 CDD SF2_C_DEAD 228 342 - -
Trre1g06362 372 Gene3D - 1 219 IPR027417 -
Trre1g06362 372 SMART ultradead3 34 231 IPR014001 -
Trre1g06362 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 219 IPR027417 -
Trre1g06362 372 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 216 IPR014001 -
Trre1g06362 372 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Trre1g06362 372 Gene3D - 220 372 IPR027417 -
Trre1g06362 372 Pfam DEAD/DEAH box helicase 40 202 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06362 Trre-Chr1 66795938 66800675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06362 5 372 Eukaryotic Initiation Factors Gene Family AT3G19760 79.948 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06362 K13025 - gmx:100795032 662.529