Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06361 ATGTCAGCGGCGATGAGAACGGACTTCGAGACAACGGAGGGCATAAAGACGATTACAACTTTCGAGGAGATGGGATTCAAACACGATTTACTCCGTGGAATCTACCAATTCGGTTTCGATAAACCATCACCGATTCAACAGCGTGCTGTTGTGCCTATCATTCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGTACTGGCAAGACATCCATGATTGCTCTAACTGTTTGTCAGCTTGTCGATACCTCCGTCAGAGAGGTGCAGGCTTTAATTGTTTCTCCGACGAGGGAACTGGCCTCTCAAACTGAAAGAATTATACGGGCTATTGGGGATTTTGTAAATATACAAGCACATGCTTGCATTGGAGGTAAAAGTGTGGGAGAAGATATAAGGAAACTTGAACATGGAGTTCATGTGGTGTCTGGAACTCCTGGTCGAGTATGTGACATGATCAAGAGGAGAACATTGCGCACAAAAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGTTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTGCCTCGTGATATTTTAGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTATAAAACGTGATGAATTGACGTTAGAGAGCATCAAGCAATATTTTGTTTCGGTTGAAAGAGAGGAATGGAAGTTTGATACTTTGTGCGATCTTTATGATAATTGCATCATCACTCAAGCTGTTGTATTCTGTAACACCAAGCGAAAGGTGGATTGGTTAACTGAAAAATTGCGTAACAATAATTTCACCGTCTCATCAATGCATGTATTGATAACAACTGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTTTAGTTATTAACTACGACCTTCCAAATAACCGAGAGTTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGTACTGCAATAAATTTTGTGAAAAGCGACGATATCAAGATCCTGAGAGATATTGAACAATATTATGGTACTCAGATTGATGATCTGCCAATGAATGTTGCTGATCTTATATAA 1116 0.4122 MSAAMRTDFETTEGIKTITTFEEMGFKHDLLRGIYQFGFDKPSPIQQRAVVPIIQGRDVIAQAQSGTGKTSMIALTVCQLVDTSVREVQALIVSPTRELASQTERIIRAIGDFVNIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTKAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPRDILEMTNKFMTDPVRILIKRDELTLESIKQYFVSVEREEWKFDTLCDLYDNCIITQAVVFCNTKRKVDWLTEKLRNNNFTVSSMHVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGTAINFVKSDDIKILRDIEQYYGTQIDDLPMNVADLI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06361 371 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 220 IPR014001 -
Trre1g06361 371 SMART helicmild6 247 332 IPR001650 -
Trre1g06361 371 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Trre1g06361 371 Pfam DEAD/DEAH box helicase 44 206 IPR011545 GO:0003676|GO:0005524
Trre1g06361 371 CDD SF2_C_DEAD 232 341 - -
Trre1g06361 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 223 IPR027417 -
Trre1g06361 371 Gene3D - 289 371 IPR027417 -
Trre1g06361 371 CDD DEADc_EIF4AIII_DDX48 21 221 - -
Trre1g06361 371 Gene3D - 3 223 IPR027417 -
Trre1g06361 371 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 16 352 - -
Trre1g06361 371 FunFam ATP-dependent RNA helicase DBP5 2 225 - -
Trre1g06361 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 360 IPR027417 -
Trre1g06361 371 Gene3D - 224 288 IPR027417 -
Trre1g06361 371 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 221 371 IPR001650 -
Trre1g06361 371 SMART ultradead3 38 235 IPR014001 -
Trre1g06361 371 Pfam Helicase conserved C-terminal domain 283 332 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06361 Trre-Chr1 66795938 66800687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06361 9 371 Eukaryotic Initiation Factors Gene Family AT3G19760 79.948 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06361 K13025 - gmx:100795032 659.062