Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06359 ATGGCTTCACGGAGAATCGTTTCGTTTCTGATACGATCATCCCTCCGTCCATCTCATTCCAAATCATCCATCACTGCTTCAACATCACGTCTCTCTTCTCCAAATGCATACATTTTCAACCGTATAACTCAATATGCCACTGCCGCCGCTAAAGCAGCCGGACCTCCCGCTCCTCCTCCTCCGCCTAATAAACTTCCTGACTCTGGAAAGATCACCGATGAGTATACCGGTAAAGGCGCCATTTGTCAAATTTGTCAGGTTATTGGTGCTGTCGTCGATGTCAGATTTGAAGAAGGTTTGCCTCCGATTTTGACCGCACTTGAGGTTCTAGATCATTCTTCACGCTTGGTTTTGGAGGTTGCGCAACATTTGGGTGAAGGTATTGTCAGAACTATTGCTATGGATGCCACTGAAGGATGTGTCCGAGGGTGGCGCGTGCTCAATACCGGCTCTCCCATTAGTATTCCTGTTGGTAGGGCTACCCTCGGACGTATCATGAATGTTATTGGAGAACCTATCGACCATAAAGGCGAATTCAAAACGGAGCATTATTTACCCATTCACAGAGAAGCTCCGCCTTTTGTTGAGCAAGCAACTGAACAAGAAATCCTTGTTACTGGTATCAAGGTTGTTGACCTGCTTGCACCATATCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTTCTTATTATGGAACTTATCAACAATGTTGCAAAGGCTCATGGTGGTTTCTCTGTTTTTGCTGGTGTCGGTGAACGAACCCGAGAGGGTAATGACTTGTACCGAGAAATGATTGAGAGTGGTGTCATTAAGTTGGGTGATCAGCAGGCTGAAAGCAAATGTGCTCTTGTATATGGTCAAATGAACGAACCCCCTGGTGCTCGTGCCTGTGTTGGTCTTACTGGTCTTACCGTTGCTGAACACTTCCGTGACGCCGAAGGACAAGATGTGCTTCTTTTTGTTGACAACATCTTTCGTTTCACTCAAGCAAATTCAGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACCGATCTTGGAGGTCTTCAAGAACGTATTACAACCACCAAGAAGGGTTCAATTACATCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACTGTGTTATCAAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCTCCACTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAAAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTGAGTGAAGATGATAAATTAACTGTTGCTCGTGCCCGTAAAATTCAACGTTTCTTAAGCCAACCTTTCCATGTGGCAGAAGTCTTCACCGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTAAAAGTTTCCAGGGTGTGTTGGATGGCAAATACGATGACCTGCCTGAACAGGCATTTTACATGGTTGGTGGTATTGATGAAGTCATTGCAAAGGGAGAGAAGATTGCTAAGGAAAATGCCACGCCTTAA 1662 0.4495 MASRRIVSFLIRSSLRPSHSKSSITASTSRLSSPNAYIFNRITQYATAAAKAAGPPAPPPPPNKLPDSGKITDEYTGKGAICQICQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGIVRTIAMDATEGCVRGWRVLNTGSPISIPVGRATLGRIMNVIGEPIDHKGEFKTEHYLPIHREAPPFVEQATEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDQQAESKCALVYGQMNEPPGARACVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTKSFQGVLDGKYDDLPEQAFYMVGGIDEVIAKGEKIAKENATP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06359 553 PIRSF ATPase_subunit_beta 2 552 - -
Trre1g06359 553 PANTHER ATP SYNTHASE 70 549 - -
Trre1g06359 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 434 IPR027417 -
Trre1g06359 553 CDD ATP-synt_F1_beta_C 435 542 - -
Trre1g06359 553 Gene3D ATP synthase, F1 beta subunit 1 45 IPR042079 -
Trre1g06359 553 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 431 547 - -
Trre1g06359 553 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 152 IPR036121 GO:0046034|GO:1902600
Trre1g06359 553 Hamap ATP synthase subunit beta [atpB]. 79 546 IPR005722 GO:0015986|GO:0045261|GO:0046933
Trre1g06359 553 Pfam ATP synthase alpha/beta family, beta-barrel domain 84 150 IPR004100 GO:0046034|GO:1902600
Trre1g06359 553 CDD ATP-synt_F1_beta_N 84 153 - -
Trre1g06359 553 FunFam ATP synthase subunit beta 431 550 - -
Trre1g06359 553 NCBIfam F0F1 ATP synthase subunit beta 82 545 IPR005722 GO:0015986|GO:0045261|GO:0046933
Trre1g06359 553 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 207 428 IPR000194 GO:0005524
Trre1g06359 553 Gene3D - 431 552 IPR024034 -
Trre1g06359 553 FunFam ATP synthase subunit beta 153 430 - -
Trre1g06359 553 Gene3D - 153 430 IPR027417 -
Trre1g06359 553 Pfam ATP synthase F1 beta subunit 1 35 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Trre1g06359 553 CDD F1-ATPase_beta_CD 154 433 - -
Trre1g06359 553 Gene3D - 70 152 - -
Trre1g06359 553 MobiDBLite consensus disorder prediction 50 70 - -
Trre1g06359 553 ProSitePatterns ATP synthase alpha and beta subunits signature. 419 428 IPR020003 GO:0005524
Trre1g06359 553 SMART AAA_5 219 491 IPR003593 GO:0016887
Trre1g06359 553 FunFam ATP synthase subunit beta 70 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06359 Trre-Chr1 66789822 66792994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06359 149 489 Primary Pumps ATPases(2) AT1G20260 28.571 3.66e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06359 K02133 - gmx:100797948 928.317