Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06350 ATGTCAAATCGCATTGTAGCCGAGGTGGTCACTGATTCTTATTTCGACTATCTCGAAATGGACAACCTCACCCGCAGTCGTGCCACCGGTGAGATGCCGACTCTCGGACAGCTTCTCAAACACGTTGGTGACGTAAGGAAGGAAGTTACCGGTGATGGTAGTGAGACTCCGGTACATCATACTCTTGATGTTGCTGGAATAGAGGCTCGTTCTCTTCCGTTTGTTCTTTCGTTCAACAACCTCACATATAGTGTTAAGGTAAAAAACAAAACCAACATATTTTCCCGTCACCGTGCTTCTCCAGTGAATATGGCTATGACACCGGCTGTTGGAGAGACGGCGTTTACAAGGAGTAAGACTCTTCTGAATGATATTTCTGGAGAAGCACGCGATGGGGAGATCATGGCGTTTCTCGGAGCCAGTGGCTCTGGAAAATCAACTTTGATTGACGCACTGGCGAATAGAATTGCGAAAGGAAAGTTGAAAGGAACGGTGAAACTGAATGGCGAGTCGGTAGAGTCTAGTCTTCTCAAGGTAATTTCAGCATATGTGATGCAAGATGATCTCCTCTTTCCAATGCTTACGGTGGAAGAAACTCTCACCTTTGCAGCCGAATTCCGATTACCACGATCACTCTCAAAATCAAAGAAAAATGCAAGAGTCCAAGCCTTAATTGATCAATTAGGACTCCGCAACGCTGCGAAAACAGTCATCGGAGACGAAGGTCACCGTGGAGTCTCTGGTGGAGAACGACGTCGAGTCTCAATCGGAATCGACATAATCCACGATCCAATTCTACTTTTCCTCGATGAACCAACCTCAGGACTCGATTCTACAAGCGCATTCATGGTTGTGAAAGTGCTCCAAAGAATCGCACAAAGTGGAAGCATAGTCATCATGTCAATTCATCAACCAAGTTACAGAATCCTAGGTCTTTTAGATCGAATGATCTTCCTATCGCGTGGCCAAACCGTTTACAGCGGTTCACCATCGCAGTTACCTTCATACTTTGCAGAATTCGGACATCCCATACCAGAAGGTGATAACCGTACAGAATTCGCATTAGACCTGATTCGTGAGCTAGAAGGTTCACCAGGAGGAACGAAAAGCTTAGTTGAATTCAACAAATCATGGCAAAGTATGACTAAGCTTCACAATTATGATGCATCACACAACACAACAACGTCCTCGTTGTCGTTGAAAGAAGCAATCAGCGCAAGCATTTCGCGAGGAAAATTAGTTTCAGGCGCTACAGCTGCAACAAATTCAAATCCAAATCCAAACGCGACACCATCTTCTTTATCTTCGATGGTGCCAGCGTATGCGAATCCGTTTTGGATTGAGTTATTAACGCTTTCGAAGCGTTCAATAACCAATTCAAGACGAATGCCTGAACTATTTGGGATAAGATTAGGTGCTGTTATGGTGACTGGTTTCATACTTGCAACAATGTTTTGGCAACTTGACAACACACCAAAAGGAGTTCAAGAAAGGCTTGGATTCTTTGCTTTTGCTATGTCAACTACTTTCTACACCACAGCAGATGCATTACCAGTATTCATTCAAGAACGGTACATTTTTATGAGAGAAACCTCTCACAATGCTTATAGAAGATGGTCTTATGTCATTTCACATGCTATTGTTGCTATACCTGCCTTGTTATTTCTGTCTCTAGCTTTTGCCTGTATAACCTTTTGGGCCGTTGGGCTTGATGGTGGATTCTCGGGCTTTTTGTTTTATTTAATTATAATATTTGCTTCGTTTTGGGCTGGGAATTCGTTTGTGTCTTTTCTATCAGGGGTGGTGCCTCATGTGATGTTGGGGTATACTATAGTAGTTGCAATTCTAGCTTATTTCTTGCTATTTAGTGGGTTCTTTATTAATAGGGATAGGATCCCTAAATATTGGATATGGTTCCATTACATGTCTTTGGTTAAGTATCCATATGAGGCTGTTTTGCAAAATGAGTTTAGTGATCCAGCTAAGTGTTTTGTGAGGGGGGTGCAAATATTTGATAATTCACCACTTGCTTTTGTTTCTGATGATCTTAAGTTGAAGTTATTGGATAGCATGAGTAACGTTTTGGGAACCAAACTCACAGCTTCTTCTTGTTTGACAACTGGTTCTGATTTGTTGAAGCAAAATGGGGTGATGGATTTGAGTAAATGGAATTTGGTGTGGATAACTGTGGCTTGGGGTTTCTTCTTCAGAATTCTATTCTACTTGTCTTTGTTGGTGGGTAGCAAGAACAAGAGGAGTTGA 2262 0.4235 MSNRIVAEVVTDSYFDYLEMDNLTRSRATGEMPTLGQLLKHVGDVRKEVTGDGSETPVHHTLDVAGIEARSLPFVLSFNNLTYSVKVKNKTNIFSRHRASPVNMAMTPAVGETAFTRSKTLLNDISGEARDGEIMAFLGASGSGKSTLIDALANRIAKGKLKGTVKLNGESVESSLLKVISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKNARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPSYFAEFGHPIPEGDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKLHNYDASHNTTTSSLSLKEAISASISRGKLVSGATAATNSNPNPNATPSSLSSMVPAYANPFWIELLTLSKRSITNSRRMPELFGIRLGAVMVTGFILATMFWQLDNTPKGVQERLGFFAFAMSTTFYTTADALPVFIQERYIFMRETSHNAYRRWSYVISHAIVAIPALLFLSLAFACITFWAVGLDGGFSGFLFYLIIIFASFWAGNSFVSFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPKYWIWFHYMSLVKYPYEAVLQNEFSDPAKCFVRGVQIFDNSPLAFVSDDLKLKLLDSMSNVLGTKLTASSCLTTGSDLLKQNGVMDLSKWNLVWITVAWGFFFRILFYLSLLVGSKNKRS 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06350 753 FunFam ABC transporter G family member 6 111 337 - -
Trre1g06350 753 Pfam ABC-2 type transporter 449 657 IPR013525 GO:0016020|GO:0140359
Trre1g06350 753 Gene3D - 112 339 IPR027417 -
Trre1g06350 753 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 346 IPR003439 GO:0005524
Trre1g06350 753 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 60 741 - -
Trre1g06350 753 SMART AAA_5 131 323 IPR003593 GO:0016887
Trre1g06350 753 Pfam ABC-2 type transporter 303 361 IPR043926 GO:0140359
Trre1g06350 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 338 IPR027417 -
Trre1g06350 753 Pfam ABC transporter 122 274 IPR003439 GO:0005524
Trre1g06350 753 ProSitePatterns ABC transporters family signature. 246 260 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06350 Trre-Chr1 66729078 66731339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06350 121 333 Calmodulin-binding Proteins AT2G36910 28.636 8.22e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06350 K05681 - gmx:100803658 1191.41