Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06342 ATGGCTTCAAGTTCTCTTAAAGGCTTTGTTTGGTTGCTATTCATTACATGTATGATTGGCATAAGTTCAGCTCAATTATCCAATAATTTCTACTCTAAAACGTGTCCAGGTGTACTACGTACAATTAGGAAAACAGTGAAGGATGTTGTGAAGAATGAGAAACGCATGGGAGCATCTTTGCTACGTCTTCATTTCCATGACTGTTTTGTTCAAGGATGTGATGCATCGGTACTATTAGACGACACCACAAATTTCACAGGTGAGAAGAATTCATTCCCAAATGCAAACTCTCTAAGGGGTTTTGAGGTAATTGATGACATCAAAAAACAATTGGAGACTATGTGTCCCAATGTTGTCTCTTGTGCTGACATCTTAGCCCTTTCTGCTAGGGACGCTGTTGCTGAGCTTGGTGGACAAAGATGGAATGTGCCATTAGGCAGAAGAGATTCATTAACAGCAAGCTTAGAGGAATCAAATTCTGACTTACCTGCTCCCTTTTTGGATCTTGATGGCCTTATTGCTGCATTCCAAAAGAAAAATTTCTCAACTGAAGAAATGGTTACTTTATCAGGTGCTCACACAATAGGGCAAGTGAGGTGCTTCTTATTCAGAGCAAGAGTATACAATGAAACAAACATAGACCCAACATTTGCTGCAGAAATGCAAGCAGCTTGTCCTTTTGAAGGGGGTGATAATAACTTATCACCTTTTGATTCTTCGACACCAACTAATTTTGACAATGCTTTCTATAGCAACTTGCTGAAAAGTAAGGGTCTAGTACATTCTGATCAACAACTATTTGGCAATGGTTCATCCACAACAAGTGATCAAGTAATAGGATATAGTAGAAACATGAGACGTTTCAAAAGAGACTTTGCAGATGCAATGTTTAAGATGACATTGCTTACCCCACTTACTGGCACTGATGGTGAGATTAGGCAAAATTGCAGGGTCATCAATGCTCCATCAGACACTCCCACCCCTGCTTAA 990 0.397 MASSSLKGFVWLLFITCMIGISSAQLSNNFYSKTCPGVLRTIRKTVKDVVKNEKRMGASLLRLHFHDCFVQGCDASVLLDDTTNFTGEKNSFPNANSLRGFEVIDDIKKQLETMCPNVVSCADILALSARDAVAELGGQRWNVPLGRRDSLTASLEESNSDLPAPFLDLDGLIAAFQKKNFSTEEMVTLSGAHTIGQVRCFLFRARVYNETNIDPTFAAEMQAACPFEGGDNNLSPFDSSTPTNFDNAFYSNLLKSKGLVHSDQQLFGNGSSTTSDQVIGYSRNMRRFKRDFADAMFKMTLLTPLTGTDGEIRQNCRVINAPSDTPTPA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06342 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Trre1g06342 329 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Trre1g06342 329 Gene3D - 29 317 - -
Trre1g06342 329 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 SUPERFAMILY Heme-dependent peroxidases 25 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 Pfam Peroxidase 43 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 FunFam Peroxidase 163 299 - -
Trre1g06342 329 Gene3D Peroxidase, domain 2 163 299 - -
Trre1g06342 329 FunFam Peroxidase 29 166 - -
Trre1g06342 329 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 CDD secretory_peroxidase 25 319 IPR033905 GO:0004601|GO:0042744
Trre1g06342 329 PANTHER PEROXIDASE 72-RELATED 21 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g06342 329 ProSiteProfiles Plant heme peroxidase family profile. 25 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06342 Trre-Chr1 66690474 66692390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06342 21 316 Peroxidase AT5G05340 56.040 2.31e-119 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06342 K00430 - gmx:100802244 487.648