Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06336 ATGATTGCTCTAACTGTTTGCCATCTTGTCGATACTTCCATCAGAGAAGTTCAGGCTTTGATTGTGTCGCCGACAAGGGAACTTGCCTCACAAACTGAAAAAGTTATATCCGCTATTGGTGATTACACAAATATACGAGCCCATGCTTGTGTCGGAGGCAAAAGTATCGGCGAAGACTTAAGGAAACTTGAACACGGAGGAGTTCATGTAGTGTCTGGAACTCCCGGTCGAGTTCTTGACATGATCAAAAGGAGAACCTTGCGCACAAAAGCTATCAAGTTGCTTGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGTTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCAGATCTTCAGGTTGTCCTGGTTTCCGCTACACTACCTCATGATATTTTGGAGATGACAAATAAGTTCATGACAGATCCTGTCAGGATCCTTGTAAAACGCGATGAATTGACATTGGAGGGTATCAAGCAATTTTTCGTTGCCGTTGAAAGGGAGGAATGGAAGTTTGATACTCTGTGCGATCTTTATGATATTCTTACCATTACTAAAGCTGTTATATTCTGTAACACCAAGGGAAAGGTGGACTGGTTAACTGAAAAATTGCGGAACAATAATTTCACGGTCTCCTCAATGCACGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCGGGAACAACCCGAGTATTGATAACAACTGATGTTTGGGCTCGTGGCCTTGATGTGCAGCAGGTTTCTCTAGTTATTAATTACGACCTTCCAAATAATCGAGAGCTCTATATTCATCGGATTGGCTGTTCTGGACGTTTTGGGCGAAAGGGTGTCACAATAAATTTTGTGAAAAGCGATGATATTAAGATACTGAGAGATATTGAACAATATTATAGTACTCAAATTGATGATTTGCCATCAAATGTTGCTGATCTTATATAA 969 0.4045 MIALTVCHLVDTSIREVQALIVSPTRELASQTEKVISAIGDYTNIRAHACVGGKSIGEDLRKLEHGGVHVVSGTPGRVLDMIKRRTLRTKAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLVSATLPHDILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDILTITKAVIFCNTKGKVDWLTEKLRNNNFTVSSMHGDMPQRERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGCSGRFGRKGVTINFVKSDDIKILRDIEQYYSTQIDDLPSNVADLI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06336 322 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 15 304 - -
Trre1g06336 322 SMART helicmild6 202 283 IPR001650 -
Trre1g06336 322 FunFam Eukaryotic initiation factor 4A-III 156 322 - -
Trre1g06336 322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 150 IPR014001 -
Trre1g06336 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 305 IPR027417 -
Trre1g06336 322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 161 322 IPR001650 -
Trre1g06336 322 CDD SF2_C_DEAD 162 292 - -
Trre1g06336 322 Gene3D - 4 157 IPR027417 -
Trre1g06336 322 Pfam Helicase conserved C-terminal domain 176 283 IPR001650 -
Trre1g06336 322 SMART ultradead3 1 165 IPR014001 -
Trre1g06336 322 Pfam DEAD/DEAH box helicase 13 136 IPR011545 GO:0003676|GO:0005524
Trre1g06336 322 Gene3D - 158 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06336 Trre-Chr1 66645511 66647185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06336 1 322 Eukaryotic Initiation Factors Gene Family AT3G19760 85.714 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06336 K13025 - gmx:100795032 590.112