Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06333 ATGAGTAAATTGCACTTATGTTTTTCTAGCTTTCTATCTGGAAGTCGAAATGGAAGGATCAGCTATGGTTATTCCAGTATCAAGGGTAAAAGATCTTCAATGGAGGATTTCTTTGAGACCAAAATATCAGAGGTTGATGGTCAGATGGTTGCCTTTTTTGGTGTTTTTGATGGCCACGGAGGATCAAGGACTGCAGAATACCTGAAAAATAATTTATTCAAGAACTTGAGTAGTCATCCCGACTTTATCAAAGACACAAAGACAGCTATTGTTGAAGCATTTAAACAAACAGACGTTGATTACCTCAATGAGGAAAAGGGACATCAAAGGGATGCTGGGTCCACTGCATCAACAGCTTTGTTGTTGGGTGACCGAATTCTTGTTGCAAATGTTGGTGATTCCCGAGTAGTTGCATCTAGAGCTGGTTTAGCTGTTCCTTTATCTGTTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAACAGGCTGGAGGATTTGTTATCTGGGCAGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAGACAAGCTTCTTAAGCCATATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGAAATTGAAGGCGTGGATTTTATAATAGTTGCAAGTGATGGTCTTTGGAATGTCATATCAAACAAGGAGGCCGTGTCTTTGGTACAAAATATCACTGATGCAGAAGTGGCTTCTAAAGAACTCATTAAAGAAGCTTATACTCGAGGAAGCTCGGACAACATTACTTGTGTTGTTGTTCGATTTGATCCATCTTGA 810 0.4074 MSKLHLCFSSFLSGSRNGRISYGYSSIKGKRSSMEDFFETKISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTALLLGDRILVANVGDSRVVASRAGLAVPLSVDHKPDRSDERQRIEQAGGFVIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIEGVDFIIVASDGLWNVISNKEAVSLVQNITDAEVASKELIKEAYTRGSSDNITCVVVRFDPS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06333 269 SMART PP2C_4 10 264 IPR001932 -
Trre1g06333 269 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Trre1g06333 269 FunFam probable protein phosphatase 2C 59 13 268 - -
Trre1g06333 269 CDD PP2Cc 20 266 IPR001932 -
Trre1g06333 269 Gene3D - 14 269 IPR036457 -
Trre1g06333 269 ProSiteProfiles PPM-type phosphatase domain profile. 21 266 IPR001932 -
Trre1g06333 269 SUPERFAMILY PP2C-like 11 267 IPR036457 -
Trre1g06333 269 PANTHER PROTEIN PHOSPHATASE 21 266 IPR015655 GO:0004722|GO:0006470
Trre1g06333 269 Pfam Protein phosphatase 2C 22 259 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06333 Trre-Chr1 66625076 66627375 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06333 10 269 PP2C-type Phosphatase Gene Family AT1G43900 74.231 4.18e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06333 K17506 - gmx:100776867 484.182