Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06326 ATGATTTCAGACACCGACTGTGTGGAACATTCCACCGTGGCCACTACCGCCGGCGAAGAAAAAACCTCCGCATATTCCGATAAAGATCACACCGCACCGCCGGCAGCTCAAAATATTGTGATGTCTTCCAAAGATAACGATTCTCTCTTCAGCGGTGGTGGCATCAGCTTTCTATCTGGAAGTCGAAATGGAAGGATCAGCTATGGTTATTCCAGTATCAAGGGTAAAAGATCTTCAATGGAGGATTTCTTTGAGACCAAAATATCAGAGGTTGATGGTCAGATGGTTGCCTTTTTTGGTGTTTTTGATGGCCACGGAGGATCAAGGACTGCAGAATACCTGAAAAATAATTTATTCAAGAACTTGAGTAGTCATCCCGACTTTATCAAAGACACAAAGACAGCTATTGTTGAAGCATTTAAACAAACAGACGTTGATTACCTCAATGAGGAAAAGGGACATCAAAGGGATGCTGGGTCCACTGCATCAACAGCTTTGTTGTTGGGTGACCGAATTCTTGTTGCAAATGTTGGTGATTCCCGAGTAGTTGCATCTAGAGCTGGTTTAGCTGTTCCTTTATCTGTTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAACAGGCTGGAGGATTTGTTATCTGGGCAGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAGACAAGCTTCTTAAGCCATATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGAAATTGAAGGCGTGGATTTTATAATAGTTGCAAGTGATGGTCTTTGGAATGTCATATCAAACAAGGAGGCCGTGTCTTTGGTACAAAATATCACTGATGCAGAAGTGGCTTCTAAAGAACTCATTAAAGAAGCTTATACTCGAGGAAGCTCGGACAACATTACTTGTGTTGTTGTTCGATTTGATCCATCTTGA 948 0.4283 MISDTDCVEHSTVATTAGEEKTSAYSDKDHTAPPAAQNIVMSSKDNDSLFSGGGISFLSGSRNGRISYGYSSIKGKRSSMEDFFETKISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTALLLGDRILVANVGDSRVVASRAGLAVPLSVDHKPDRSDERQRIEQAGGFVIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIEGVDFIIVASDGLWNVISNKEAVSLVQNITDAEVASKELIKEAYTRGSSDNITCVVVRFDPS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06326 315 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g06326 315 SUPERFAMILY PP2C-like 60 313 IPR036457 -
Trre1g06326 315 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g06326 315 CDD PP2Cc 66 312 IPR001932 -
Trre1g06326 315 PANTHER PROTEIN PHOSPHATASE 41 312 IPR015655 GO:0004722|GO:0006470
Trre1g06326 315 Gene3D - 60 315 IPR036457 -
Trre1g06326 315 ProSiteProfiles PPM-type phosphatase domain profile. 67 312 IPR001932 -
Trre1g06326 315 Pfam Protein phosphatase 2C 68 305 IPR001932 -
Trre1g06326 315 ProSitePatterns PPM-type phosphatase domain signature. 98 106 IPR000222 GO:0043169
Trre1g06326 315 SMART PP2C_4 56 310 IPR001932 -
Trre1g06326 315 FunFam probable protein phosphatase 2C 59 59 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06326 Trre-Chr1 66571411 66574982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06326 39 315 PP2C-type Phosphatase Gene Family AT1G43900 73.285 1.63e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06326 K17506 - gmx:100776867 535.413