Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06322 ATGCAGCCATACGGAGATGTTGATTCCACATTGAGGGCAATCGCCGGTCGCGCCGAGGGTTTCGGTCGCCTAGCCATCGGTGGTCTCCACGGTCCTCTCTATTTGGTTACCTCCCTTTCAGATGATGGTCCTGGTACCCTTCGTGAAGGATGTCGTAGAAAGGAGCCGCTGTGGATTGTTTTTGAAGTTTCAGGTACAATTCATCTTTCATCATACTTGAGTGTGTCCTCTCATAAGACAATTGATGGAAGAGGCCAGAGGATTAAATTGACTGGGAAAGAATATTTGGATAGACGTTGCAGCCTCCGAGATTATGATGACGGACTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCCGACCCAACACACGTTGGTGATAGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACAAACCAGAGACACCCTCGTGTGAGATTTGGTAAAGTTCATCTGTACAACAATTACACCAGAAACTGGACAGTATATGCAATTTGTGCTAGTGTTGAGTCCCAGATATACTCCCAATGCAACATATATGAAGCAGGAGATAAGAAAAAGGCTTATGAATTTTATACTGAGAAGGCGGCAGACAAAGAAGAGCCAAAGTCTGGTATCATAATATCTGAAGGAGACTTGGTTCTGAATGGTGCTCAGCCATGCTTGCCAACAGAATATAAAGAATCAGTTTTCCATCCCAGTGAATATTACCCAACTTGGACAATGGAAGCGGCTACACATTCTCTCAGAGAGATTATCCAGTTATGTACAGGTTGGCAGTCCCTTTGCAGGCCAGTAGACAATATGGTAATGAACTAG 882 0.441 MQPYGDVDSTLRAIAGRAEGFGRLAIGGLHGPLYLVTSLSDDGPGTLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQRIKLTGKEYLDRRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTNQRHPRVRFGKVHLYNNYTRNWTVYAICASVESQIYSQCNIYEAGDKKKAYEFYTEKAADKEEPKSGIIISEGDLVLNGAQPCLPTEYKESVFHPSEYYPTWTMEAATHSLREIIQLCTGWQSLCRPVDNMVMN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06322 293 SUPERFAMILY Pectin lyase-like 15 283 IPR011050 -
Trre1g06322 293 SMART amb_all 29 207 IPR002022 -
Trre1g06322 293 Pfam Pectate lyase 106 200 IPR002022 -
Trre1g06322 293 Gene3D - 99 280 IPR012334 -
Trre1g06322 293 PANTHER PECTATE LYASE 18-RELATED 6 93 IPR045032 GO:0030570
Trre1g06322 293 Gene3D - 4 98 IPR012334 -
Trre1g06322 293 PRINTS Pollen allergen Amb family signature 17 34 IPR018082 -
Trre1g06322 293 PRINTS Pollen allergen Amb family signature 72 88 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06322 Trre-Chr1 66533513 66535597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06322 41 291 Polysaccharide Lyase AT3G55140 68.056 8.36e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06322 K01728 - gmx:100802068 510.375