Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06321 ATGCAGCCATACGGAGATGTTGATTCCACATTGAGGGCAATCGCCGGTCGCGCCGAGGGTTTCGGTCGCCTAGCCATCGGTGGTCTCCACGATGATGGTCCTGGTACCCTTCGTGAAGGATGTCGTAGAAAGGAGCCGCTGTGGATTGTTTTTGAAGTTTCAGGTACAATTCATCTTTCATCATACTTGAGTGTGTCCTCTCATAAGACAATTGATGGAAGAGGCCAGAGGATTAAATTGACTGGGAAAGAATATTTGGATAGACGTTGCAGCCTCCGAGATTATGATGACGGACTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCCGACCCAACACACGTTGGTGATAGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACAAACCAGAGACACCCTCGTGTGAGATTTGGTAAAGTTCATCTGTACAACAATTACACCAGAAACTGGACAGTATATGCAATTTGTGCTAGTGTTGAGTCCCAGATATACTCCCAATGCAACATATATGAAGCAGGAGATAAGAAAAAGGCTTATGAATTTTATACTGAGAAGGCGGCAGACAAAGAAGAGCCAAAGTCTGGTATCATAATATCTGAAGGAGACTTGGTTCTGAATGGTGCTCAGCCATGCTTGCCAACAGAATATAAAGAATCAGTTTTCCATCCCAGTGAATATTACCCAACTTGGACAATGGAAGCGGCTACACATTCTCTCAGAGAGATTATCCAGTTATGTACAGGTTGGCAGTCCCTTTGCAGGCCAGTAGACAATATGGTAATGAACTAG 852 0.4401 MQPYGDVDSTLRAIAGRAEGFGRLAIGGLHDDGPGTLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQRIKLTGKEYLDRRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTNQRHPRVRFGKVHLYNNYTRNWTVYAICASVESQIYSQCNIYEAGDKKKAYEFYTEKAADKEEPKSGIIISEGDLVLNGAQPCLPTEYKESVFHPSEYYPTWTMEAATHSLREIIQLCTGWQSLCRPVDNMVMN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06321 283 Gene3D - 4 88 IPR012334 -
Trre1g06321 283 Gene3D - 89 270 IPR012334 -
Trre1g06321 283 SMART amb_all 34 197 IPR002022 -
Trre1g06321 283 PANTHER PECTATE LYASE 18-RELATED 7 83 IPR045032 GO:0030570
Trre1g06321 283 PRINTS Pollen allergen Amb family signature 26 51 IPR018082 -
Trre1g06321 283 PRINTS Pollen allergen Amb family signature 62 78 IPR018082 -
Trre1g06321 283 SUPERFAMILY Pectin lyase-like 15 273 IPR011050 -
Trre1g06321 283 Pfam Pectate lyase 96 190 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06321 Trre-Chr1 66533513 66535597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06321 21 281 Polysaccharide Lyase AT3G55140 66.667 5.67e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06321 K01728 - gmx:100802068 486.108