Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06295 ATGATGGGTTCGAGGGGGCTTTTCGGGTGGTCACCACCTCATGTTCAACCTCTGACGCCGGTGTCGGAGGTTTCGGAGCCGCCGGAGTCTCCTTCACCGTATATGGACCTCGGTGCAGAGACGTCTGCGTCGCAGCAAATGGAGGCTGAGGAGGAGATGGAAGAGATGGAGGATATTGAGCCGCCACCAGCTTCTGTTCCTTTCTCTCAACTCTTTGCTTGTGCTGACCGGTTTGACTGGTTTCTCATGGTGGTTGGTTCTATCGCCGCTGCTGCTCACGGCACTGCTCTTGTTGTTTACTTGCACTACTTTGCTAAAGTTATTCGGGTTCCTCAATATCAACAGGAGGATCAGTTTCATAGGTTCAAGGAGCTTGCTTTGACCATTGTTTATATTGCTGGTGGTGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACCGGAGAACGGCAGACAGCTGTCATCAGATCAAAATATGTTCGAGTATTACTTAACCAAGATATGAGTTTCTTTGATACTTATGGGAACAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTACTGCTCATTCAGTCTGCTCTCAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTTCATAGGCTTGCAGAGAATATCCAAGATGCATATGCCGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCCTATATACGGACCTTGTCTGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTCCAAGGGCTTGGCCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTATACATGGAAAAGCTCACGGTGGGGAAATTATAACAGCTCTGTTTGCTGTGATTTTAAGCGGCTTGGGATTAAACCAAGCTGCAACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATTTGAGATGATAAGCCGGTCATCCTCATCTTTTGACCACGACGGAAGTGCTCCTGTGTCTGTACAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCACGCCCTGAAATCCCTATCTTAAGTGGGTTTTATCTCACAGTTCCTGCTAAGAAAACTGTGGCACTTGTTGGAAGAAACGGTTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTGGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCATATGGAAGGGATACCACAGCGGATCAAATTGAAGAGGCTGCTAAAATAGCTCACGCACATACCTTTATCAGTTCATTAGATAAAGGTTATGATACACAGATTGGCAGGGCTGGTTTAGCTTTGACAGAAGAACAGAAAATAAAGCTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCCATTCTCCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAAGAGGCTCTGGATCTCCTTATGCTGGGGCGCTCGACAATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCAGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCACGATGAATTATTGACCCTGGGTGGCTTGTATGCAGAGCTTCTTCGATGTGAAGAAGCCACAAAACTTCCCAAGAGGATGCCTGCTCGCAACTACAAGAAGACTGCAGCTTTTCAAATTGAGAAAGATTCTTCAGAGAGTCATAGCTGCAAAGAACCATCGTCCCCTAGAATGATGAAGTCACCCTCTCTTCAAAGGATTTCTGCTGTATTTCGGCCTTCAGATGGCTTCTTTAACTTACAAGATTCACCACAAGTGCAAAGCCCACCGCCTGAGAAGATGACGGAGAATGGTCAGTCTTTGGATTCTACAGAGAAAGAGCCGTCAATAAAAAGGCAGGATAGTTTTGAAATGAGACTACCTGAGTTACCTAAGATTGATGTTCAGTCAGTGCATCGACAAACATCAAATGGTTCTGATCCAGAATCCCCTGTTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAAACATTTAGCAGACCAGATAGTTATTCTGATGAATTTTCAGTGAAAATGAACGACACAAAGGATGCACGGCATCGGCATCAACCCTCATTTTGGAGACTGGCAGAGCTCAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCAATCTTTGGTGCGTTCAATCCCCTTCTAGCATATGTTATTGGACTGGTGGTGACAACTTACTATAGAATCGATAAAACTCATCACTTGCGGGGGGAGATAGACAAGTGGTGCTTACTCATTGCCTGCATGGGTATTGTGACAGTTGTAGCCAACTTTTTACAGCATTTCTACTTTGGTATAATGGGGGAGAAAATGACCGAAAGAGTCCGGAGAATGATGTTCTCAGCCATGCTTCGTAATGAAATTGGATGGTATGATGATGAGGAGAACAGTGCCGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGACTTTCCATATTTATACAGGACATTGCTGCAGTTATTGTTGCTTTTCTCATCGGTGTTTCGCTGCACTGGAGAATAGCTCTTGTGGCTTTAGCAACACTTCCGGTTCTCTGTGTTTCTGCTATTGCCCAGAAATTGTGGCTTGCTGGTTTTTCAAGGGGCATACAGGAAATGCACCGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACCGTTGTTGCATTTTGTGCTGGTAATAAGGTTATGGAACTCTACAGGCTGCAGTTAAATAAAATATTTAAGCAGAGCTTTCTTCATGGATTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTCTGGTACACTGCAATATGTATAAAAAACAAATATGTAGATGCACCTACTGCCCTCAAGGAGTACATTGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTCAAGCGACGTAAATCTCTCATTTCAGTGTTTGAAATTATAGACCGGGTGCCTAAAATTGATCCTGATGAAAACTCTGCCTTGAAGCCACCTAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTACTCGGCCAGAAGTTCTGGTATTAAGCAATTTCAGTCTCAAAGTCAGTGGGGGCCAAACAATTGCTGTTGTGGGAGTTTCAGGGTCAGGGAAGAGCACTATTATATCTTTGATGGAGAGATATTACGATCCAGTTGCTGGCCAAGTTTTACTGGATGGGAGGGATTTAAAACTGTATAATCTGAAATGGCTTAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCAATTATCTTTTCAACAACCATAAGGGAAAACATCATATATGCCAGACATAATGCCAGTGAAGCTGAAATGAAAGAGGCCGCAAGAATAGCTAATGCTCATCATTTCATTAGTAGCCTGCCTCATGGTTATGACACTCATGTTGGAATGCGAGGGGTTGATTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCACCTATCTTGTTGTTGGATGAAGCTAGCTCATCAATTGAATCAGAGTCAAGCCGAGTAGTGCAAGAGGCACTAGACACTCTAATAATGGGAAACAAGACCACTATTTTAATAGCTCACAGGGCTGCCATGATGAGGCATGTAGACAATATAGTCGTACTTAATGGAGGACGGATAGTGGAAGAGGGGACCCATGATTCATTGGTGGCTAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAAGGTTTGCGTCAGCATCGGCTTGTTTAG 4197 0.4239 MMGSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYMDLGAETSASQQMEAEEEMEEMEDIEPPPASVPFSQLFACADRFDWFLMVVGSIAAAAHGTALVVYLHYFAKVIRVPQYQQEDQFHRFKELALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLSAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFDHDGSAPVSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTADQIEEAAKIAHAHTFISSLDKGYDTQIGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLGGLYAELLRCEEATKLPKRMPARNYKKTAAFQIEKDSSESHSCKEPSSPRMMKSPSLQRISAVFRPSDGFFNLQDSPQVQSPPPEKMTENGQSLDSTEKEPSIKRQDSFEMRLPELPKIDVQSVHRQTSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSYSDEFSVKMNDTKDARHRHQPSFWRLAELSFAEWLYAVLGSIGAAIFGAFNPLLAYVIGLVVTTYYRIDKTHHLRGEIDKWCLLIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEIGWYDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDIAAVIVAFLIGVSLHWRIALVALATLPVLCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFKQSFLHGLAIGFAFGFSQFLLFACNALLLWYTAICIKNKYVDAPTALKEYIVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDENSALKPPNVYGSIELKNVDFCYPTRPEVLVLSNFSLKVSGGQTIAVVGVSGSGKSTIISLMERYYDPVAGQVLLDGRDLKLYNLKWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06295 1398 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1149 1386 IPR003439 GO:0005524
Trre1g06295 1398 CDD ABC_6TM_Pgp_ABCB1_D2_like 821 1132 - -
Trre1g06295 1398 FunFam ABC transporter B family member 20 392 639 - -
Trre1g06295 1398 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 402 637 IPR003439 GO:0005524
Trre1g06295 1398 MobiDBLite consensus disorder prediction 1 49 - -
Trre1g06295 1398 FunFam ABC transporter B family member 6 766 994 - -
Trre1g06295 1398 SUPERFAMILY ABC transporter transmembrane region 71 377 IPR036640 GO:0005524|GO:0016020
Trre1g06295 1398 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 826 1118 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g06295 1398 Coils Coil 248 268 - -
Trre1g06295 1398 SUPERFAMILY ABC transporter transmembrane region 813 1134 IPR036640 GO:0005524|GO:0016020
Trre1g06295 1398 Coils Coil 39 59 - -
Trre1g06295 1398 MobiDBLite consensus disorder prediction 749 791 - -
Trre1g06295 1398 FunFam ABC transporter B family member 20 70 404 - -
Trre1g06295 1398 Pfam ABC transporter 423 567 IPR003439 GO:0005524
Trre1g06295 1398 Gene3D ABC transporter type 1, transmembrane domain 70 648 IPR036640 GO:0005524|GO:0016020
Trre1g06295 1398 Pfam ABC transporter 1167 1315 IPR003439 GO:0005524
Trre1g06295 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1138 1385 IPR027417 -
Trre1g06295 1398 MobiDBLite consensus disorder prediction 725 741 - -
Trre1g06295 1398 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 377 - -
Trre1g06295 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 636 IPR027417 -
Trre1g06295 1398 FunFam ABC transporter B family member 20 1139 1388 - -
Trre1g06295 1398 SMART AAA_5 1176 1363 IPR003593 GO:0016887
Trre1g06295 1398 SMART AAA_5 429 608 IPR003593 GO:0016887
Trre1g06295 1398 MobiDBLite consensus disorder prediction 698 724 - -
Trre1g06295 1398 FunFam ABC transporter B family member 6 996 1146 - -
Trre1g06295 1398 Pfam ABC transporter transmembrane region 85 352 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g06295 1398 Pfam ABC transporter transmembrane region 830 1083 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g06295 1398 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g06295 1398 Gene3D ABC transporter type 1, transmembrane domain 1108 1146 IPR036640 GO:0005524|GO:0016020
Trre1g06295 1398 Gene3D ABC transporter type 1, transmembrane domain 767 990 IPR036640 GO:0005524|GO:0016020
Trre1g06295 1398 Gene3D - 1147 1386 IPR027417 -
Trre1g06295 1398 MobiDBLite consensus disorder prediction 698 792 - -
Trre1g06295 1398 PANTHER ABC TRANSPORTER B FAMILY 45 838 IPR039421 -
Trre1g06295 1398 MobiDBLite consensus disorder prediction 657 683 - -
Trre1g06295 1398 Gene3D - 392 639 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06295 Trre-Chr1 66387793 66395723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06295 60 695 Calmodulin-binding Proteins AT2G36910 43.451 3.12e-162 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06295 K05658 - gmx:100799399 2526.51