Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06293 ATGGCAATCTACAGAATAGCAATTGGGTCTCCAAGAGAGGCTAGCAATCCTGCTGCCATTAGAGCTGCTTTTGCAGAGTTCTTCTCTATGATCATTTTTGTTTTTGCTGGCCAAGGCTCTGGGATGGCTTACAGCAAACTTACAAACAATGGAGCAGCAACTCCTGAAGGTCTCATAGTTGCATCATTATCTCATGCATTTGGTTTATTTGTGGCTGTTTCTGTTGGTGCAAACATTTCTGGTGGTCATGTGAATCCTGCAGTCACATTTGGTGCTTTCATTGGAGGAAACATTACCTTCTTGAGAAGTATTTTGTATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTCAATTCCTGCACTGGTGGAATGGAAACATCGGCTTTCTCACTATCCTCTGGTGTGTCTGTGTGGAATGCATTAGTTTTTGAGATTGTGATGACATTTGGATTGGTATATACAGTTTATGCAACAGCAATAGACCCAAAGAAAGGGAATGTTGGTGTTGTAGCACCACTAGCAATTGGTTGTGTAGTAGGTGCCAATATCTTAGTTGGTGGTGTATTTGATGGTGCATCAATGAACCCTGCTGTTTCATTTGGACCTGCTGTGGTTAGTAGGACATGGACCCATCATTGGGTCTATTGGGTTGGCCCATTCATTGGTTCAGCTGCTGCTGCCATTCTCTATGATAATATCTTCATTGCTGATGATCATGAACCCCTTTCAAATAGTGACTTCTAG 756 0.422 MAIYRIAIGSPREASNPAAIRAAFAEFFSMIIFVFAGQGSGMAYSKLTNNGAATPEGLIVASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRSILYWIAQLLGSVVACILLNSCTGGMETSAFSLSSGVSVWNALVFEIVMTFGLVYTVYATAIDPKKGNVGVVAPLAIGCVVGANILVGGVFDGASMNPAVSFGPAVVSRTWTHHWVYWVGPFIGSAAAAILYDNIFIADDHEPLSNSDF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06293 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 SUPERFAMILY Aquaporin-like 16 246 IPR023271 -
Trre1g06293 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Trre1g06293 251 FunFam Probable aquaporin TIP1-1 4 250 - -
Trre1g06293 251 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g06293 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Trre1g06293 251 PANTHER AQUAPORIN-8 6 245 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06293 Trre-Chr1 66382153 66383843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06293 1 251 Major Intrinsic Protein MIP AT4G01470 80.159 1.70e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06293 K09873 - gmx:100818197 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06293 1 66382153 66383843 Trre1g06293 1 66382153 66383843 ECH